Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0948c_(-)_1057650_1057967
DateFri Jul 26 01:50:54 BST 2019
Unique Job ID124df60d45b964a3
SequenceMRPEPPHHEN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.625 Y:41.646 Z:48.169
Model (left) based on template c2qbvA_
Top template information
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis
Confidence and coverage
Confidence: 99.8% Coverage: 70%
73 residues ( 70% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qbvA_



99.8 100
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis
2c5hubA_



99.8 56
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: high-resolution structure of chorismate mutase from corynebacterium2 glutamicum
3c5go2D_



99.7 28
PDB header:isomerase
Chain: D: PDB Molecule:protein aroa(g);
PDBTitle: crystal structure of chorismate mutase like domain of bifunctional2 dahp synthase of bacillus subtilis in complex with citrate
4c3rmiA_



99.6 25
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase protein;
PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate
5d1ybza1



99.6 30
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
6d2d8da1



99.6 25
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
7d1ecma_



99.6 32
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
8d2gtvx1



99.6 22
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:monomeric chorismate mutase
9c6al9A_



99.6 25
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from helicobacter pylori in2 complex with prephenate
10c3nvtA_



99.4 23
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
11c4oj7E_



99.2 13
PDB header:isomerase
Chain: E: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from burkholderia thailandensis
12d2h9da1



99.2 22
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
13d2fp1a1



99.0 14
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
14c5ts9H_



98.9 16
PDB header:isomerase
Chain: H: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from burkholderia phymatum
15c2gbbA_



98.9 19
PDB header:isomerase
Chain: A: PDB Molecule:putative chorismate mutase;
PDBTitle: crystal structure of secreted chorismate mutase from yersinia pestis
16c1r48A_



86.0 30
PDB header:transport protein
Chain: A: PDB Molecule:proline/betaine transporter;
PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop
17c1r48B_



85.5 30
PDB header:transport protein
Chain: B: PDB Molecule:proline/betaine transporter;
PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop
18c3ssuB_



83.8 23
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment
19c2xu6B_



53.2 17
PDB header:protein binding
Chain: B: PDB Molecule:mdv1 coiled coil;
PDBTitle: mdv1 coiled coil domain
20c6cg8A_



45.3 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:upf0335 protein b7z12_12435;
PDBTitle: structure of c. crescentus gapr-dna
21c3uuxD_



not modelled 44.8 19
PDB header:apoptosis
Chain: D: PDB Molecule:mitochondrial division protein 1;
PDBTitle: crystal structure of yeast fis1 in complex with mdv1 fragment2 containing n-terminal extension and coiled coil domains
22c3swkB_



not modelled 41.6 22
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1b fragment
23c1gk4A_



not modelled 40.7 25
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment (cys2)
24c3s4rB_



not modelled 38.9 23
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
25c1piqA_



not modelled 35.6 10
PDB header:dna binding protein
Chain: A: PDB Molecule:protein (general control protein gcn4-piq);
PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues
26c3tnuA_



not modelled 34.4 19
PDB header:cytosolic protein
Chain: A: PDB Molecule:keratin, type i cytoskeletal 14;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
27c3r84O_



not modelled 33.4 13
PDB header:transcription
Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11;
PDBTitle: structure of the mediator head subcomplex med11/22
28c6fpgG_



not modelled 31.0 33
PDB header:cell invasion
Chain: G: PDB Molecule:chromosome 16, whole genome shotgun sequence;
PDBTitle: structure of the ustilago maydis chorismate mutase 1 in complex with a2 zea mays kiwellin
29c3tnuB_



not modelled 30.7 18
PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
30c3movB_



not modelled 30.0 14
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of human lamin-b1 coil 2 segment
31d1gxha_



not modelled 29.9 33
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
32c6h9mA_



not modelled 29.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:coiled-coil domain-containing protein 90b, mitochondrial,
PDBTitle: coiled-coil domain-containing protein 90b residues 43-125 from homo2 sapiens fused to a gcn4 adaptor
33c2yy0D_



not modelled 29.6 21
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
34c2xv5A_



not modelled 29.3 17
PDB header:structural protein
Chain: A: PDB Molecule:lamin-a/c;
PDBTitle: human lamin a coil 2b fragment
35c1gk6B_



not modelled 29.2 19
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine zipper (z2b)
36d1ayia_



not modelled 28.1 29
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
37c1gcmA_



not modelled 27.6 10
PDB header:transcription regulation
Chain: A: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
38d2vlqa1



not modelled 27.3 18
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
39c6e2jB_



not modelled 27.2 19
PDB header:protein fibril
Chain: B: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between human keratin 1 coil 1b2 containing s233l mutation and wild-type human keratin 10 coil 1b
40c4c46B_



not modelled 27.1 14
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4, general control protein gcn4;
PDBTitle: andrei-n-lvpas fused to gcn4 adaptors
41c4qkoA_



not modelled 27.0 24
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pyocin-s2 immunity protein;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
42c2cceA_



not modelled 26.8 7
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: parallel configuration of pli e20s
43c2cceB_



not modelled 26.8 7
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: parallel configuration of pli e20s
44c2dq3A_



not modelled 26.7 20
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
45c1gcmB_



not modelled 26.7 10
PDB header:transcription regulation
Chain: B: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
46c4czdD_



not modelled 26.5 16
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
47c2ia0A_



not modelled 26.4 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
48c4wxaE_



not modelled 26.2 24
PDB header:transcription
Chain: E: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: crystal structure of binary complex gon7-pcc1
49c1x8yA_



not modelled 26.0 17
PDB header:structural protein
Chain: A: PDB Molecule:lamin a/c;
PDBTitle: human lamin coil 2b
50c4uhpB_



not modelled 26.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:bacteriocin immunity protein;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
51c2ccfA_



not modelled 25.9 7
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: antiparallel configuration of pli e20s
52c1gcmC_



not modelled 25.8 10
PDB header:transcription regulation
Chain: C: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
53c2no8A_



not modelled 25.5 29
PDB header:immune system
Chain: A: PDB Molecule:colicin-e2 immunity protein;
PDBTitle: nmr structure analysis of the colicin immuntiy protein im2
54c4czdA_



not modelled 25.3 29
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
55c1wleB_



not modelled 21.7 20
PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate
56c1w5jD_



not modelled 21.4 7
PDB header:four helix bundle
Chain: D: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
57c1w5jC_



not modelled 21.4 7
PDB header:four helix bundle
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
58c1w5jB_



not modelled 21.4 7
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
59c1w5jA_



not modelled 21.4 7
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
60c2vbzA_



not modelled 20.3 22
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
61c6ec0A_



not modelled 19.6 19
PDB header:protein fibril
Chain: A: PDB Molecule:keratin 1;
PDBTitle: crystal structure of the wild-type heterocomplex between coil 1b2 domains of human intermediate filament proteins keratin 1 (krt1) and3 keratin 10 (krt10)
62c4c1aC_



not modelled 19.4 29
PDB header:hydrolase
Chain: C: PDB Molecule:orf1-encoded protein;
PDBTitle: coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
63c4c1aB_



not modelled 19.4 29
PDB header:hydrolase
Chain: B: PDB Molecule:orf1-encoded protein;
PDBTitle: coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
64c4c1aA_



not modelled 19.4 29
PDB header:hydrolase
Chain: A: PDB Molecule:orf1-encoded protein;
PDBTitle: coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
65c1w5kD_



not modelled 17.3 7
PDB header:four helix bundle
Chain: D: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
66c1w5kC_



not modelled 17.3 7
PDB header:four helix bundle
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
67c1w5kA_



not modelled 17.3 7
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
68c1w5kB_



not modelled 17.3 7
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: an anti-parallel four helix bundle
69c6a9pD_



not modelled 16.8 24
PDB header:structural protein
Chain: D: PDB Molecule:glial fibrillary acidic protein;
PDBTitle: crystal structure of the human glial fibrillary acidic protein 1b2 domain
70c1usdA_



not modelled 16.6 14
PDB header:signaling protein
Chain: A: PDB Molecule:vasodilator-stimulated phosphoprotein;
PDBTitle: human vasp tetramerisation domain l352m
71c2dbbA_



not modelled 15.5 20
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
72c2l5gB_



not modelled 14.7 18
PDB header:transcription regulator
Chain: B: PDB Molecule:putative uncharacterized protein ncor2;
PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207
73c2cg4B_



not modelled 14.5 43
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
74c1ce9B_



not modelled 14.2 10
PDB header:helix capping
Chain: B: PDB Molecule:protein (gcn4-pmse);
PDBTitle: helix capping in the gcn4 leucine zipper
75c1ce9A_



not modelled 14.2 10
PDB header:helix capping
Chain: A: PDB Molecule:protein (gcn4-pmse);
PDBTitle: helix capping in the gcn4 leucine zipper
76c1ce9D_



not modelled 14.2 10
PDB header:helix capping
Chain: D: PDB Molecule:protein (gcn4-pmse);
PDBTitle: helix capping in the gcn4 leucine zipper
77c1ce9C_



not modelled 14.2 10
PDB header:helix capping
Chain: C: PDB Molecule:protein (gcn4-pmse);
PDBTitle: helix capping in the gcn4 leucine zipper
78c4dzlE_



not modelled 14.2 33
PDB header:de novo protein
Chain: E: PDB Molecule:coiled-coil peptide cc-tri;
PDBTitle: a de novo designed coiled coil cc-tri
79c1gclD_



not modelled 14.2 4
PDB header:leucine zipper
Chain: D: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
80c1zimB_



not modelled 14.1 10
PDB header:leucine zipper
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state
81c1zimC_



not modelled 14.1 10
PDB header:leucine zipper
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state
82d2cfxa1



not modelled 14.1 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
83c4zryA_



not modelled 14.0 17
PDB header:protein fibril
Chain: A: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between coil 2b domains of2 human intermediate filament proteins keratin 1 (krt1) and keratin 103 (krt10)
84c6co6B_



not modelled 13.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
85c4dzlF_



not modelled 13.9 33
PDB header:de novo protein
Chain: F: PDB Molecule:coiled-coil peptide cc-tri;
PDBTitle: a de novo designed coiled coil cc-tri
86c4dzlB_



not modelled 13.9 33
PDB header:de novo protein
Chain: B: PDB Molecule:coiled-coil peptide cc-tri;
PDBTitle: a de novo designed coiled coil cc-tri
87c4dzlC_



not modelled 13.9 33
PDB header:de novo protein
Chain: C: PDB Molecule:coiled-coil peptide cc-tri;
PDBTitle: a de novo designed coiled coil cc-tri
88c2dq0A_



not modelled 13.8 23
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog
89c1gclA_



not modelled 13.8 3
PDB header:leucine zipper
Chain: A: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
90c1gclB_



not modelled 13.8 3
PDB header:leucine zipper
Chain: B: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
91c1gclC_



not modelled 13.8 3
PDB header:leucine zipper
Chain: C: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
92c3m48A_



not modelled 13.7 14
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper peptide mutant
93c3utmC_



not modelled 13.6 21
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
94c1zimA_



not modelled 13.6 11
PDB header:leucine zipper
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state
95d1ugoa_



not modelled 13.6 9
Fold:Spectrin repeat-like
Superfamily:BAG domain
Family:BAG domain
96c2kogA_



not modelled 13.6 6
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
97c3i1gA_



not modelled 13.5 14
PDB header:metal binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: crystal structure of a gcn4 leucine zipper mutant at 1.6 a2 resolution
98c1uo2A_



not modelled 13.2 3
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
99c1w5iA_



not modelled 13.2 3
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: aba does not affect topology of pli.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite