Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0953c_(-)_1064118_1064966
DateFri Jul 26 01:50:54 BST 2019
Unique Job IDe67a75324bb83a47
SequenceMHYGLVLFTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.419 Y:44.116 Z:66.035
Model (left) based on template c2b81D_
Top template information
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
Confidence and coverage
Confidence:100.0% Coverage: 93%
263 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2b81D_



100.0 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
2d1lucb_



100.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
3d1luca_



100.0 18
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
4c6friD_



100.0 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:alkanal monooxygenase beta chain;
PDBTitle: structure of luxb from photobacterium leiognathi
5d1ezwa_



100.0 28
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
6c3raoB_



100.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987.
7c5tlcA_



100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:dibenzothiophene desulfurization enzyme a;
PDBTitle: crystal structure of bdsa from bacillus subtilis wu-s2b
8c3sdoB_



100.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
9c1z69D_



100.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)-
PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420
10c2i7gA_



100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
11c5w4zA_



100.0 24
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
12d1tvla_



100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
13c1tvlA_



100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein ytnj;
PDBTitle: structure of ytnj from bacillus subtilis
14d1nqka_



100.0 24
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
15c3c8nB_



100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
16c2wgkA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase;
PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida
17d1f07a_



100.0 24
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
18c5dqpA_



100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:edta monooxygenase;
PDBTitle: edta monooxygenase (emoa) from chelativorans sp. bnc1
19c6ak1B_



100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:dimethyl-sulfide monooxygenase;
PDBTitle: crystal structure of dmoa from hyphomicrobium sulfonivorans
20c3b9nB_



100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkane monoxygenase;
PDBTitle: crystal structure of long-chain alkane monooxygenase (lada)
21c5wanA_



not modelled 100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrimidine monooxygenase ruta;
PDBTitle: crystal structure of a flavoenzyme ruta in the pyrimidine catabolic2 pathway
22d1rhca_



not modelled 100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
23d1nfpa_



not modelled 99.7 14
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
24d1fvpa_



not modelled 97.4 8
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
25c3cqkB_



not modelled 81.4 19
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
26c3vniC_



not modelled 75.9 13
PDB header:isomerase
Chain: C: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structures of d-psicose 3-epimerase from clostridium2 cellulolyticum h10 and its complex with ketohexose sugars
27c3wqoB_



not modelled 73.9 15
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein mj1311;
PDBTitle: crystal structure of d-tagatose 3-epimerase-like protein
28c4ovxA_



not modelled 67.7 23
PDB header:isomerase
Chain: A: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structure of xylose isomerase domain protein from planctomyces2 limnophilus dsm 3776
29d1xp3a1



not modelled 67.2 27
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
30d1i60a_



not modelled 61.9 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
31c3vndD_



not modelled 57.3 18
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
32c2x7vA_



not modelled 56.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc
33c2zvrA_



not modelled 51.4 29
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related protein from2 thermotoga maritima
34c3ih1A_



not modelled 50.3 15
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
35c2ekcA_



not modelled 49.6 25
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
36d1m3ua_



not modelled 47.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
37c1zlpA_



not modelled 46.9 18
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
38d1m5wa_



not modelled 46.3 27
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
39c4ur7B_



not modelled 45.2 13
PDB header:lyase
Chain: B: PDB Molecule:keto-deoxy-d-galactarate dehydratase;
PDBTitle: crystal structure of keto-deoxy-d-galactarate dehydratase2 complexed with pyruvate
40c5uncB_



not modelled 44.9 15
PDB header:isomerase
Chain: B: PDB Molecule:phosphoenolpyruvate phosphomutase;
PDBTitle: the crystal structure of phosphoenolpyruvate phosphomutase from2 streptomyces platensis subsp. rosaceus
41c3obeB_



not modelled 44.8 10
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
42c3gk0H_



not modelled 44.5 24
PDB header:transferase
Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein from2 burkholderia pseudomallei
43c3dcpB_



not modelled 44.2 11
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase hisk from2 listeria monocytogenes. northeast structural genomics consortium3 target lmr141.
44c2yb1A_



not modelled 43.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
45c3dx5A_



not modelled 42.7 19
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
46c6gvbC_



not modelled 42.4 16
PDB header:hydrolase
Chain: C: PDB Molecule:exo-beta-1,4-mannosidase;
PDBTitle: crystal structure of cutibacterium acnes exo-beta-1,4-mannosidase
47c3qy6A_



not modelled 41.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
48c3e38A_



not modelled 41.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal-
PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution
49c5dlcC_



not modelled 39.3 30
PDB header:transferase
Chain: C: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase2 from pseudomonas aeruginosa
50c2ze3A_



not modelled 36.6 16
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
51c2qiwA_



not modelled 36.2 21
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
52c3lyeA_



not modelled 33.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
53c4lsbA_



not modelled 32.4 31
PDB header:lyase
Chain: A: PDB Molecule:lyase/mutase;
PDBTitle: crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
54c5kzmA_



not modelled 32.4 15
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-beta chain complex from2 francisella tularensis
55c4k3zA_



not modelled 28.8 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-erythrulose 4-phosphate dehydrogenase;
PDBTitle: crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
56c3ju2A_



not modelled 28.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021
57c5kinC_



not modelled 28.4 23
PDB header:lyase
Chain: C: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
58d1x7fa2



not modelled 26.9 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
59c5zhzA_



not modelled 26.8 25
PDB header:dna binding protein
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of the apurinic/apyrimidinic endonuclease iv from2 mycobacterium tuberculosis
60c3ngfA_



not modelled 26.8 23
PDB header:isomerase
Chain: A: PDB Molecule:ap endonuclease, family 2;
PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis
61c4cngB_



not modelled 26.0 26
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
62c5i4rA_



not modelled 25.8 17
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
63c2w9mB_



not modelled 25.5 17
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
64c4fioA_



not modelled 25.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: crystal structure of methenyltetrahydromethanopterin cyclohydrolase2 from methanobrevibacter ruminantium
65d1m65a_



not modelled 24.5 17
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
66c5tchG_



not modelled 24.1 25
PDB header:lyase
Chain: G: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
67c2jjmH_



not modelled 24.0 9
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from bacillus2 anthracis orf ba1558.
68c3l23A_



not modelled 23.6 19
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
69d1ujqa_



not modelled 23.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
70c4gx9A_



not modelled 23.2 15
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit epsilon,dna polymerase iii
PDBTitle: crystal structure of a dna polymerase iii alpha-epsilon chimera
71c3e0fA_



not modelled 23.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphoesterase;
PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution
72c2p0oA_



not modelled 22.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf871;
PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function
73c3auoB_



not modelled 22.1 23
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
74c3ez4B_



not modelled 21.8 9
PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase2 from burkholderia pseudomallei
75d1qlma_



not modelled 21.4 22
Fold:Methenyltetrahydromethanopterin cyclohydrolase
Superfamily:Methenyltetrahydromethanopterin cyclohydrolase
Family:Methenyltetrahydromethanopterin cyclohydrolase
76c6k0aC_



not modelled 21.2 11
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
77c3bh1A_



not modelled 20.3 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
78d1yx1a1



not modelled 20.2 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:KguE-like
79d1uoua2



not modelled 19.9 20
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
80c5zfsA_



not modelled 18.1 13
PDB header:isomerase
Chain: A: PDB Molecule:d-allulose-3-epimerase;
PDBTitle: crystal structure of arthrobacter globiformis m30 sugar epimerase2 which can produce d-allulose from d-fructose
81c3lmzA_



not modelled 17.5 10
PDB header:isomerase
Chain: A: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution
82c3o6cA_



not modelled 17.2 19
PDB header:transferase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni
83d1oyaa_



not modelled 16.7 18
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
84c2yz5B_



not modelled 15.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol phosphatase;
PDBTitle: histidinol phosphate phosphatase complexed with phosphate
85d1z41a1



not modelled 15.1 29
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
86d1k77a_



not modelled 14.7 13
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Hypothetical protein YgbM (EC1530)
87c6bmaA_



not modelled 14.5 13
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: the crystal structure of indole-3-glycerol phosphate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168
88c1x7fA_



not modelled 14.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:outer surface protein;
PDBTitle: crystal structure of an uncharacterized b. cereus protein
89c6ahuJ_



not modelled 13.6 13
PDB header:hydrolase/rna
Chain: J: PDB Molecule:ribonuclease p protein subunit p30;
PDBTitle: cryo-em structure of human ribonuclease p with mature trna
90c5dxxA_



not modelled 13.4 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:artemisinic aldehyde delta(11(13)) reductase;
PDBTitle: crystal structure of dbr2
91c3qxbB_



not modelled 13.0 18
PDB header:isomerase
Chain: B: PDB Molecule:putative xylose isomerase;
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution
92d1gwja_



not modelled 12.6 35
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
93d1vyra_



not modelled 12.6 24
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
94c4a3uB_



not modelled 12.5 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
95c4tmcB_



not modelled 12.4 24
PDB header:flavoprotein
Chain: B: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from candida macedoniensis2 aku4588 complexed with p-hydroxybenzaldehyde
96c6mp2B_



not modelled 12.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:blman5b;
PDBTitle: crystal structure of blman5b solved by siras
97c2gq8A_



not modelled 12.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone
98c2h90A_



not modelled 11.6 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
99c4b5nA_



not modelled 11.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: crystal structure of oxidized shewanella yellow enzyme 4 (sye4)

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