Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0955_(-)_1066082_1067449
DateFri Jul 26 01:50:55 BST 2019
Unique Job ID1bf375fcd9ae3425
SequenceVNRVSASADD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.350 Y:21.135 Z:33.959
Model (left) based on template c2n28A_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
Confidence and coverage
Confidence: 22.2% Coverage: 5%
23 residues ( 5% of your sequence) have been modelled with 22.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2n28A_



22.2 22
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
2c2cseW_



16.9 16
PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
3c4nfuB_



16.1 17
PDB header:signaling protein
Chain: B: PDB Molecule:senescence-associated carboxylesterase 101;
PDBTitle: structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
4c4nfuA_



15.6 17
PDB header:signaling protein
Chain: A: PDB Molecule:eds1;
PDBTitle: structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
5c6hu9U_



11.9 40
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
6c6hcyA_



10.8 44
PDB header:membrane protein
Chain: A: PDB Molecule:metalloreductase steap4;
PDBTitle: human steap4 bound to nadp, fad, heme and fe(iii)-nta.
7c5xpdA_



10.8 4
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
8c3trsA_



7.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:aspergillopepsin-2 light chain;
PDBTitle: the crystal structure of aspergilloglutamic peptidase from aspergillus2 niger

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below