Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0960_(-)_1073549_1073932
DateWed Jul 31 22:05:02 BST 2019
Unique Job IDa1cff4d2643b1e66
SequenceMIVVDASAAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.088 Y:47.121 Z:35.236
Model (left) based on template d1v8pa_
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.9% Coverage: 94%
120 residues ( 94% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1v8pa_



99.9 25
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c1v8pK_



99.9 25
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
3d2fe1a1



99.7 31
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c2fe1A_



99.7 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
5c4xgrG_



99.4 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
6c6a7vG_



99.3 20
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
7c3zvkC_



99.3 12
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
8c5x3tD_



99.2 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
9c5wzfB_



99.2 26
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
10c5l6mC_



99.1 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
11c3i8oA_



99.0 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
12c4chgC_



99.0 22
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
13c6nklA_



99.0 15
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
14c5sv2A_



99.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
15c3tndC_



99.0 11
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
16d2h1ca1



99.0 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c3ix7A_



98.9 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
18c3h87B_



98.8 13
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
19c3dboB_



98.8 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
20d1v96a1



98.7 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c5ywwA_



not modelled 98.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
22c5f4hF_



not modelled 98.7 14
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
23d1y82a1



not modelled 98.6 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c2lcqA_



not modelled 98.0 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
25d1o4wa_



not modelled 97.9 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26d1w8ia_



not modelled 97.5 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
27c2hwwC_



not modelled 96.9 18
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c2mdtA_



not modelled 95.4 22
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
29c5yz4A_



not modelled 94.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c5jpqd_



not modelled 94.5 19
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
31c6g5iy_



not modelled 94.5 24
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
32c2hwyB_



not modelled 69.5 21
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
33c4mj7B_



not modelled 55.0 7
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
34c3v33A_



not modelled 49.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c3v32B_



not modelled 45.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
36c1ql1A_



not modelled 14.7 23
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
37c2ifmA_



not modelled 11.6 23
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
38d1vjla_



not modelled 11.2 14
Fold:Hypothetical protein TM0160
Superfamily:Hypothetical protein TM0160
Family:Hypothetical protein TM0160
39c3rmsA_



not modelled 9.3 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein svir_20580 from2 saccharomonospora viridis
40d2gjxa1



not modelled 6.7 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
41d1nowa1



not modelled 6.3 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
42d1q0qa2



not modelled 6.3 12
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
43d1qbaa3



not modelled 6.0 31
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
44c2zkr6_



not modelled 5.5 6
PDB header:ribosomal protein/rna
Chain: 6: PDB Molecule:60s ribosomal protein l30e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
45c3rpmA_



not modelled 5.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetyl-hexosaminidase;
PDBTitle: crystal structure of the first gh20 domain of a novel beta-n-acetyl-2 hexosaminidase strh from streptococcus pneumoniae r6
46c4mcjC_



not modelled 5.3 11
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nucleoside deoxyribosyltransferase2 (bdi_0649) from parabacteroides distasonis atcc 8503 at 2.40 a3 resolution
47c2ylaA_



not modelled 5.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis

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