Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0961_(-)_1074078_1074425
DateWed Jul 31 22:05:02 BST 2019
Unique Job IDb3cfea48d5e35c0b
SequenceVRVPSQWMIS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.651 Y:33.052 Z:20.340
Model (left) based on template c5gpdA_
Top template information
PDB header:dna binding protein
Chain: A: PDB Molecule:sterol regulatory element-binding protein 1;
PDBTitle: crystal structure of the binding domain of srebp from fission yeast
Confidence and coverage
Confidence: 39.4% Coverage: 30%
35 residues ( 30% of your sequence) have been modelled with 39.4% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5gpdA_



39.4 14
PDB header:dna binding protein
Chain: A: PDB Molecule:sterol regulatory element-binding protein 1;
PDBTitle: crystal structure of the binding domain of srebp from fission yeast
2c3kdpG_



26.6 47
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
3c3kdpH_



26.6 47
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
4c2kvxA_



24.2 55
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b12;
PDBTitle: solution structure of kalata b12
5c4hqjG_



23.6 47
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
6c6hraD_



23.1 50
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e1 outward-facing state2 (state 1)
7c4hqjE_



22.0 47
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
8c6hrbD_



18.1 44
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e2 inward-facing state2 (state 2)
9c5mrwD_



18.1 44
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
10c5mrwH_



18.1 44
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
11c5mrwL_



18.1 44
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
12d1j5ja_



15.5 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
13c6gcs3_



14.4 23
PDB header:oxidoreductase
Chain: 3: PDB Molecule:nd3 subunit (nu3m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
14c3ju6A_



13.9 38
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of dimeric arginine kinase in complex with2 amppnp and arginine
15c3rkoA_



13.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
16c3rkoE_



13.9 28
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
17d1m15a2



12.8 37
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
18c1wcoN_



12.6 50
PDB header:peptide/antibiotic
Chain: N: PDB Molecule:nisin z;
PDBTitle: the solution structure of the nisin-lipid ii complex
19c4he8B_



12.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh-quinone oxidoreductase subunit 7;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
20d1qk1a2



12.2 32
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
21d1qh4a2



not modelled 11.7 33
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
22d1vrpa2



not modelled 11.2 33
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
23d1u6ra2



not modelled 10.0 37
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
24c2kr1A_



not modelled 9.6 20
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin protein ligase e3a;
PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662
25c3l2eB_



not modelled 9.4 16
PDB header:transferase
Chain: B: PDB Molecule:glycocyamine kinase beta chain;
PDBTitle: glycocyamine kinase, alpha-beta heterodimer from marine worm2 namalycastis sp.
26d1g0wa2



not modelled 8.8 33
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
27d1crka2



not modelled 8.4 32
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
28c1qk1H_



not modelled 8.4 32
PDB header:transferase (creatine kinase)
Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial;
PDBTitle: crystal structure of human ubiquitous mitochondrial creatine kinase
29c2m60A_



not modelled 8.2 80
PDB header:antimicrobial protein
Chain: A: PDB Molecule:enterocin jsb;
PDBTitle: enterocin 7b
30c6fh2A_



not modelled 8.1 44
PDB header:signaling protein
Chain: A: PDB Molecule:protein-arginine kinase;
PDBTitle: protein arginine kinase mcsb in the amp-pn-bound state
31d1xlya_



not modelled 8.0 86
Fold:RNA-binding protein She2p
Superfamily:RNA-binding protein She2p
Family:RNA-binding protein She2p
32c4uoiB_



not modelled 7.9 73
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: unexpected structure for the n-terminal domain of hepatitis c virus2 envelope glycoprotein e1
33c1i0eD_



not modelled 7.8 37
PDB header:transferase
Chain: D: PDB Molecule:creatine kinase,m chain;
PDBTitle: crystal structure of creatine kinase from human muscle
34c1rl9A_



not modelled 7.8 37
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex
35c1zecA_



not modelled 7.2 86
PDB header:viral peptide
Chain: A: PDB Molecule:nef1-25;
PDBTitle: nmr solution structure of nef1-25, 20 structures
36d2gw6a1



not modelled 6.5 14
Fold:Restriction endonuclease-like
Superfamily:tRNA-intron endonuclease catalytic domain-like
Family:tRNA-intron endonuclease catalytic domain-like
37d1ppjw_



not modelled 6.0 22
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
38c6humC_



not modelled 6.0 24
PDB header:proton transport
Chain: C: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 3;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
39c4rf9A_



not modelled 5.8 32
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of double-domain arginine kinase from anthopleura2 japonicas in complex with l-arginine and atpgs
40d2glia5



not modelled 5.4 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41d3cx5i1



not modelled 5.4 30
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
42c4wo8A_



not modelled 5.3 26
PDB header:transferase
Chain: A: PDB Molecule:taurocyamine kinase;
PDBTitle: the substrate-free duplicated taurocyamine kinase from schistosoma2 mansoni

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below