Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0962c_(lprP)_1074444_1075118
DateWed Jul 31 22:05:02 BST 2019
Unique Job ID489d0e2c5ab28497
SequenceMKRTSRSLTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.252 Y:32.434 Z:33.011
Model (left) based on template c2v7sA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
Confidence and coverage
Confidence: 89.7% Coverage: 58%
131 residues ( 58% of your sequence) have been modelled with 89.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2v7sA_



89.7 12
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
2c3udiA_



78.0 35
PDB header:penicillin-binding protein/antibiotic
Chain: A: PDB Molecule:penicillin-binding protein 1a;
PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g
3c3zg8B_



57.4 32
PDB header:penicillin-binding protein
Chain: B: PDB Molecule:penicillin-binding protein 4;
PDBTitle: crystal structure of penicillin binding protein 4 from2 listeria monocytogenes in the ampicillin bound form
4c5u2gA_



49.6 33
PDB header:lipid-binding protein
Chain: A: PDB Molecule:penicillin-binding protein 1a;
PDBTitle: 2.6 angstrom resolution crystal structure of penicillin-binding2 protein 1a from haemophilus influenzae
5c3fwlA_



49.4 35
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:penicillin-binding protein 1b;
PDBTitle: crystal structure of the full-length transglycosylase pbp1b from2 escherichia coli
6c2olvA_



42.4 32
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding protein 2;
PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex
7d2bgxa1



41.4 52
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
8c2ot8D_



40.5 78
PDB header:transport protein
Chain: D: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
9c3dwkC_



39.8 32
PDB header:transferase
Chain: C: PDB Molecule:penicillin-binding protein 2;
PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer
10c1vw4b_



30.4 18
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
11c5namA_



28.3 100
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-670) in dmpg/dhpc2 bicelles
12c3hzsA_



26.2 16
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin
13d2olua1



21.7 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PBP transglycosylase domain-like
14c2q5tA_



18.7 29
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: full-length cholix toxin from vibrio cholerae
15d2oqoa1



16.0 38
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PBP transglycosylase domain-like
16c3assB_



15.2 22
PDB header:viral protein
Chain: B: PDB Molecule:capsid protein;
PDBTitle: crystal structure of p domain from norovirus funabashi258 stain in the2 complex with lewis-b
17d1bm9a_



12.0 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Replication terminator protein (RTP)
18c2p5xB_



12.0 22
PDB header:cell cycle
Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein;
PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein
19d1muwa_



11.9 20
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
20c5jeaK_



11.2 22
PDB header:hydrolase/rna
Chain: K: PDB Molecule:superkiller protein 7,endolysin;
PDBTitle: structure of a cytoplasmic 11-subunit rna exosome complex including2 ski7, bound to rna
21d1n7za_



not modelled 10.3 38
Fold:Baseplate structural protein gp8
Superfamily:Baseplate structural protein gp8
Family:Baseplate structural protein gp8
22c1ye9E_



not modelled 10.3 48
PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
23c2xsgB_



not modelled 9.9 46
PDB header:hydrolase
Chain: B: PDB Molecule:ccman5;
PDBTitle: structure of the gh92 family glycosyl hydrolase ccman5
24d1br2a2



not modelled 9.6 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
25c4qlpB_



not modelled 9.6 16
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:alanine and proline rich protein, tuberculosis necrotizing
PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
26c5civA_



not modelled 9.1 17
PDB header:unknown function
Chain: A: PDB Molecule:sibling bacteriocin;
PDBTitle: sibling lethal factor precursor - dfsb
27d2amha1



not modelled 9.0 19
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:Maf-like
28c2kq5A_



not modelled 8.9 47
PDB header:unknown function
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha
29c3vmtA_



not modelled 8.9 16
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog
30c2wvyA_



not modelled 8.5 41
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482
31c5uwzA_



not modelled 8.2 52
PDB header:lyase
Chain: A: PDB Molecule:aldehyde decarbonylase;
PDBTitle: protein 12 with aldehyde deformylating oxygenase activity from2 gloeobacter violaceus
32c5fu4B_



not modelled 7.9 52
PDB header:sugar binding protein
Chain: B: PDB Molecule:cbm74-rfgh5;
PDBTitle: the complexity of the ruminococcus flavefaciens cellulosome reflects2 an expansion in glycan recognition
33c4p2nD_



not modelled 7.8 36
PDB header:viral protein
Chain: D: PDB Molecule:major capsid protein;
PDBTitle: structure of the p domain from a gi.7 norovirus variant in complex2 with lex hbga
34d1ikpa1



not modelled 7.7 38
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Exotoxin A, N-terminal domain
35d1ei5a1



not modelled 7.5 57
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
36c2zl5A_



not modelled 7.5 26
PDB header:viral protein
Chain: A: PDB Molecule:58 kd capsid protein;
PDBTitle: atomic resolution structural characterization of2 recognition of histo-blood group antigen by norwalk virus
37c4pwyA_



not modelled 7.1 40
PDB header:transferase
Chain: A: PDB Molecule:calmodulin-lysine n-methyltransferase;
PDBTitle: crystal structure of a calmodulin-lysine n-methyltransferase fragment
38d1wpga2



not modelled 7.1 32
Fold:HAD-like
Superfamily:HAD-like
Family:Meta-cation ATPase, catalytic domain P
39c5lnkn_



not modelled 7.1 55
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
40c4pd3B_



not modelled 7.0 26
PDB header:contractile protein
Chain: B: PDB Molecule:nonmuscle myosin heavy chain b, alpha-actinin a chimera
PDBTitle: crystal structure of rigor-like human nonmuscle myosin-2b
41c6f92B_



not modelled 6.8 46
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 alpha-mannosidase bt3965 from bacteroides2 thetaiotaomicron in complex with mannoimidazole (mani)
42c4wj4A_



not modelled 6.8 25
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartate--trna(asp/asn) ligase;
PDBTitle: crystal structure of non-discriminating aspartyl-trna synthetase from2 pseudomonas aeruginosa complexed with trna(asn) and aspartic acid
43d1p80a2



not modelled 6.8 48
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
44d2uubk1



not modelled 6.6 40
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
45c6itcB_



not modelled 6.6 34
PDB header:protein transport
Chain: B: PDB Molecule:translocating peptide;
PDBTitle: structure of a substrate engaged seca-secy protein translocation2 machine
46c2dfsA_



not modelled 6.5 30
PDB header:contractile protein/transport protein
Chain: A: PDB Molecule:myosin-5a;
PDBTitle: 3-d structure of myosin-v inhibited state
47c4b24A_



not modelled 6.5 20
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
48c2dceA_



not modelled 6.3 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1915 protein;
PDBTitle: solution structure of the swirm domain of human kiaa19152 protein
49d1q3ma_



not modelled 6.2 44
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
50d2drwa1



not modelled 6.1 19
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
51c5swiD_



not modelled 6.1 35
PDB header:hydrolase
Chain: D: PDB Molecule:sugar hydrolase;
PDBTitle: crystal structure of spgh92 in complex with mannose
52c2qziA_



not modelled 5.8 58
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311.
53c1br2C_



not modelled 5.8 28
PDB header:muscle protein
Chain: C: PDB Molecule:myosin;
PDBTitle: smooth muscle myosin motor domain complexed with mgadp.alf4
54c3lq6A_



not modelled 5.7 50
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure of murine norovirus protruding (p) domain
55c2ww1B_



not modelled 5.6 41
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
56d1t98a2



not modelled 5.6 24
Fold:STAT-like
Superfamily:MukF C-terminal domain-like
Family:MukF C-terminal domain-like
57d1a4ea_



not modelled 5.5 50
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
58d1m5ha2



not modelled 5.5 29
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
59d1qw1a1



not modelled 5.5 22
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
60c5udbB_



not modelled 5.3 17
PDB header:replication
Chain: B: PDB Molecule:origin recognition complex subunit 2;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
61c2n8cA_



not modelled 5.1 64
PDB header:protein binding, de novo protein
Chain: A: PDB Molecule:cysteine knot;
PDBTitle: cystein knot with 2fp integrin avb6 cancer recognition site
62c3l2tB_



not modelled 5.1 15
PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)

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