Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0966c_(-)_1077237_1077839
DateWed Jul 31 22:05:03 BST 2019
Unique Job ID2072465cbee4a10f
SequenceMSNSAQRDAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.453 Y:27.439 Z:46.016
Model (left) based on template c4qrkA_
Top template information
PDB header:cell adhesion
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative cell adhesion protein (clospo_03726)2 from clostridium sporogenes atcc 15579 at 1.95 a resolution
Confidence and coverage
Confidence: 98.6% Coverage: 44%
87 residues ( 44% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4qrkA_



98.6 21
PDB header:cell adhesion
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative cell adhesion protein (clospo_03726)2 from clostridium sporogenes atcc 15579 at 1.95 a resolution
2d2pp4a1



55.8 9
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
3d2p12a1



41.2 25
Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
4d2caza1



40.4 15
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
5c2cazD_



40.0 15
PDB header:protein transport
Chain: D: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: escrt-i core
6d2f6ma1



39.8 15
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
7d2p6va1



35.4 21
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
8c1ponB_



27.0 14
PDB header:calcium-binding protein
Chain: B: PDB Molecule:troponin c;
PDBTitle: site iii-site iv troponin c heterodimer, nmr
9c3i38K_



26.2 14
PDB header:chaperone
Chain: K: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
10c3i38B_



24.8 14
PDB header:chaperone
Chain: B: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
11c3i38D_



24.7 14
PDB header:chaperone
Chain: D: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
12c3i38A_



24.7 14
PDB header:chaperone
Chain: A: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
13c3i38G_



24.7 14
PDB header:chaperone
Chain: G: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
14c2p22A_



22.8 19
PDB header:transport protein
Chain: A: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: structure of the yeast escrt-i heterotetramer core
15c3i38E_



22.3 14
PDB header:chaperone
Chain: E: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
16c3i38C_



22.3 14
PDB header:chaperone
Chain: C: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
17c4egeA_



21.5 50
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase pepe;
PDBTitle: crystal structure of dipeptidase pepe from mycobacterium ulcerans
18c3e56A_



21.4 44
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 2.0 angstrom resolution crystal structure of npr1517, a putative2 heterocyst differentiation inhibitor from nostoc punctiforme
19d2cazb1



20.7 11
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
20c2cazB_



20.7 11
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vps28;
PDBTitle: escrt-i core
21c3i38L_



not modelled 20.2 14
PDB header:chaperone
Chain: L: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
22d1kxpd3



not modelled 20.1 26
Fold:Serum albumin-like
Superfamily:Serum albumin-like
Family:Serum albumin-like
23c3i38F_



not modelled 19.4 14
PDB header:chaperone
Chain: F: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
24d2f6mb1



not modelled 19.1 10
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
25c3znuI_



not modelled 18.4 14
PDB header:lyase
Chain: I: PDB Molecule:5-chloromuconolactone dehalogenase;
PDBTitle: crystal structure of clcf in crystal form 2
26c5j73A_



not modelled 17.8 23
PDB header:de novo protein
Chain: A: PDB Molecule:protein design 2l4hc2_9;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
27c4nxiB_



not modelled 16.6 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: rv2466c mediates the activation of tp053 to kill replicating and non-2 replicating mycobacterium tuberculosis
28c6cumA_



not modelled 16.4 23
PDB header:transferase
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of a c-terminal proteolytic fragment of a protein2 annotated as an lao/ao transport system atpase but likely meab and3 mmaa-like gtpase from mycobacterium smegmatis
29c3i38H_



not modelled 16.3 14
PDB header:chaperone
Chain: H: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
30c6e5fA_



not modelled 15.4 16
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein lpqn;
PDBTitle: crystal structure of lpqn involved in cell envelope biogenesis of2 mycobacterium tuberculosis
31c2kq1A_



not modelled 14.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh0266 protein;
PDBTitle: solution structure of protein bh0266 from bacillus2 halodurans. northeast structural genomics consortium target3 bhr97a
32c5xtaC_



not modelled 14.2 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:virk protein;
PDBTitle: crystal structure of lpg1832, a virk family protein from legionella2 pneumophila
33c3i38J_



not modelled 14.2 14
PDB header:chaperone
Chain: J: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
34d2bh1x1



not modelled 14.2 25
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
35c2bh1Y_



not modelled 14.2 25
PDB header:transport protein
Chain: Y: PDB Molecule:general secretion pathway protein e,;
PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae
36c3li6D_



not modelled 13.9 13
PDB header:metal binding protein
Chain: D: PDB Molecule:calcium-binding protein;
PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica
37d1ctda_



not modelled 13.9 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
38d3orca_



not modelled 13.4 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
39c6mi5X_



not modelled 13.2 15
PDB header:metal binding protein
Chain: X: PDB Molecule:lanmodulin;
PDBTitle: nmr solution structure of lanmodulin (lanm) complexed with2 yttrium(iii) ions
40c3sqlB_



not modelled 13.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3;
PDBTitle: crystal structure of glycoside hydrolase from synechococcus
41d1ug3a1



not modelled 12.7 24
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
42c2f7nA_



not modelled 11.9 8
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding stress response protein, dps family;
PDBTitle: structure of d. radiodurans dps-1
43d1mlia_



not modelled 11.9 14
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Muconalactone isomerase, MLI
44c5eu0B_



not modelled 11.9 15
PDB header:toxin
Chain: B: PDB Molecule:antitoxin 1;
PDBTitle: fic domain of bep1 from bartonella rochalimae in complex with biaa
45c3vdoB_



not modelled 10.8 20
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
46c4yyfC_



not modelled 10.7 22
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
47c2vrgA_



not modelled 10.6 10
PDB header:transport
Chain: A: PDB Molecule:multiple coagulation factor deficiency protein 2;
PDBTitle: structure of human mcfd2
48c3lz8A_



not modelled 10.6 14
PDB header:chaperone
Chain: A: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution.
49c2y6tE_



not modelled 10.5 20
PDB header:hydrolase/inhibitor
Chain: E: PDB Molecule:ecotin;
PDBTitle: molecular recognition of chymotrypsin by the serine protease inhibitor2 ecotin from yersinia pestis
50c6b2zd_



not modelled 10.5 44
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
51c3lsgD_



not modelled 10.4 11
PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
52d1xxfc_



not modelled 10.2 20
Fold:Ecotin, trypsin inhibitor
Superfamily:Ecotin, trypsin inhibitor
Family:Ecotin, trypsin inhibitor
53c5i2oA_



not modelled 10.0 14
PDB header:metal binding protein
Chain: A: PDB Molecule:ef-hand domain-containing protein d2;
PDBTitle: structure of ef-hand containing protein
54c4n7vC_



not modelled 9.9 55
PDB header:cell cycle
Chain: C: PDB Molecule:centrosomal protein of 152 kda;
PDBTitle: crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep152 n-terminal fragment
55c6qfjA_



not modelled 9.8 25
PDB header:transport protein
Chain: A: PDB Molecule:magnetosome membrane protein mamb, putative co/zn/cd cation
PDBTitle: mamb ctd magnetosome protein [desulfamplus magnetovallimortis bw-1]
56d1slua_



not modelled 9.8 20
Fold:Ecotin, trypsin inhibitor
Superfamily:Ecotin, trypsin inhibitor
Family:Ecotin, trypsin inhibitor
57d1jmxa1



not modelled 9.8 33
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
58d2csba1



not modelled 9.7 21
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
59c3l6aA_



not modelled 9.7 18
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4 gamma 2;
PDBTitle: crystal structure of the c-terminal region of human p97
60c4v0xB_



not modelled 9.7 36
PDB header:hydrolase/hydrolase regulator
Chain: B: PDB Molecule:protein phosphatase 1 regulatory subunit 15b;
PDBTitle: the crystal structure of mouse pp1g in complex with truncated human2 ppp1r15b (631-684)
61c3aqjQ_



not modelled 9.4 17
PDB header:metal binding protein
Chain: Q: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of a c-terminal domain of the bacteriophage p2 tail2 spike protein, gpv
62c6odmK_



not modelled 9.1 30
PDB header:viral protein
Chain: K: PDB Molecule:capsid vertex component 2;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
63c5hqhA_



not modelled 9.1 23
PDB header:unknown function
Chain: A: PDB Molecule:lmo2119 protein;
PDBTitle: 1.32 angstrom crystal structure of ybbr like domain of lmo2119 protein2 from listeria monocytogenes.
64d1tjoa_



not modelled 9.1 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
65c5bzaA_



not modelled 9.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of cbsa from thermotoga neapolitana
66d1s6ja_



not modelled 8.8 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
67d1c3ga2



not modelled 8.6 14
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
68c3ndqA_



not modelled 8.5 22
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: structure of human tfiis domain ii
69c3iq1A_



not modelled 8.5 13
PDB header:metal transport
Chain: A: PDB Molecule:dps family protein;
PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins
70c2mxtA_



not modelled 8.5 21
PDB header:splicing
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q;
PDBTitle: nmr structure of the acidic domain of syncrip (hnrnpq)
71c5cuvB_



not modelled 8.5 16
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
72c3nctC_



not modelled 8.4 22
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
73c3i38I_



not modelled 8.4 14
PDB header:chaperone
Chain: I: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
74d1pvaa_



not modelled 8.3 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Parvalbumin
75c3wo8B_



not modelled 8.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
76d1ezsa_



not modelled 8.2 20
Fold:Ecotin, trypsin inhibitor
Superfamily:Ecotin, trypsin inhibitor
Family:Ecotin, trypsin inhibitor
77d1f54a_



not modelled 8.2 9
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
78d1ou9a_



not modelled 8.1 26
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
79d2owpa1



not modelled 8.1 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
80c4il1A_



not modelled 8.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:calmodulin, calcineurin subunit b type 1, serine/threonine-
PDBTitle: crystal structure of the rat calcineurin
81c1t7lA_



not modelled 7.9 10
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
82d1br1b_



not modelled 7.9 12
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
83c2bpbB_



not modelled 7.9 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
84c3l7sA_



not modelled 7.8 8
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans
85c3fpnA_



not modelled 7.7 16
PDB header:dna binding protein
Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
86d5pala_



not modelled 7.7 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Parvalbumin
87c3ppgA_



not modelled 7.7 10
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of the candida albicans methionine synthase by2 surface entropy reduction, alanine variant with zinc
88c3u1dA_



not modelled 7.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei.
89c5hjhB_



not modelled 7.5 0
PDB header:metal binding protein
Chain: B: PDB Molecule:ferritin, dps family protein;
PDBTitle: dps4 from nostoc punctiforme in complex with fe ions
90c1wr2A_



not modelled 7.5 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1789;
PDBTitle: crystal structure of ph1788 from pyrococcus horikoshii ot3
91d1ulza1



not modelled 7.3 11
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
92c4ol4A_



not modelled 7.3 12
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
93c3h96B_



not modelled 7.3 32
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
94c4annA_



not modelled 7.2 20
PDB header:membrane protein
Chain: A: PDB Molecule:essb;
PDBTitle: crystal structure staphylococcus aureus essb cytoplasmic fragment
95c2k2aA_



not modelled 7.2 15
PDB header:contractile protein
Chain: A: PDB Molecule:troponin c;
PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1
96c2iosA_



not modelled 7.2 18
PDB header:antitumor protein
Chain: A: PDB Molecule:programmed cell death 4, pdcd4;
PDBTitle: crystal structure of the c-terminal ma3 domain of pdcd42 (mouse); form 3
97c4wpxA_



not modelled 7.2 14
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 31-like protein;
PDBTitle: chaetomium theromophilum trex2 cid domain complex
98c4ednL_



not modelled 7.0 60
PDB header:signaling protein/cell adhesion
Chain: L: PDB Molecule:paxillin;
PDBTitle: crystal structure of beta-parvin ch2 domain in complex with paxillin2 ld1 motif
99c2ncpA_



not modelled 7.0 26
PDB header:metal binding protein
Chain: A: PDB Molecule:25 kda calcium-binding protein;
PDBTitle: nmr solution structure for the c-terminal domain of tetrahymena tcb22 in the presence of calcium

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite