Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0970_(-)_1081056_1081688
DateWed Jul 31 22:05:03 BST 2019
Unique Job ID8c15d3910bd3e453
SequenceMIHDLMLRWV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.701 Y:105.760 Z:62.699
Model (left) based on template c3jcuw_
Top template information
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
Confidence and coverage
Confidence: 15.5% Coverage: 14%
29 residues ( 14% of your sequence) have been modelled with 15.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3jcuw_



15.5 21
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
2c4qndA_



14.9 33
PDB header:membrane protein
Chain: A: PDB Molecule:chemical transport protein;
PDBTitle: crystal structure of a semisweet
3c1kcfB_



10.0 41
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
4c3a0hk_



8.6 39
PDB header:electron transport
Chain: K: PDB Molecule:photosystem ii reaction center protein k;
PDBTitle: crystal structure of i-substituted photosystem ii complex
5c2y69Z_



8.0 23
PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
6d1v54m_



5.9 23
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
7c2lg6A_



5.8 83
PDB header:antimicrobial protein
Chain: A: PDB Molecule:gallinacin-2;
PDBTitle: nmr structure of chicken avbd2-k31a mutant
8c2i5nH_



5.5 29
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below