Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0987_(-)_1102546_1105113
DateWed Jul 31 22:05:05 BST 2019
Unique Job ID6e853b966a62dd9a
SequenceMNDQAPVAYA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:95.078 Y:79.366 Z:55.807
Model (left) based on template c5ws4A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
Confidence and coverage
Confidence:100.0% Coverage: 45%
382 residues ( 45% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
550 residues ( 64%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ws4A_



100.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
2c5nikK_



100.0 19
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
3c5xu1M_



100.0 16
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
4c5lj7B_



100.0 17
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
5c5udfB_



99.4 14
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
6c5naaB_



99.4 18
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
7c3is6A_



98.9 12
PDB header:transport protein
Chain: A: PDB Molecule:putative permease protein, abc transporter;
PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a
8c5f9qA_



98.9 10
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein yknz;
PDBTitle: crystal structure of the extracellular domain of noncanonic abc-type2 transporter yknz from gram-positive bacteria
9c3ftjA_



98.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein
PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
10c5c59F_



98.1 15
PDB header:hydrolase
Chain: F: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
11c5c59G_



96.3 15
PDB header:hydrolase
Chain: G: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
12d2jioa1



83.3 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
13c2a8vA_



81.8 23
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
14d1a62a2



81.1 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
15d1vlfm1



80.8 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
16c2iv2X_



80.6 7
PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h from e.2 coli
17c4mt1A_



80.2 11
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
18c5l75F_



78.3 18
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
19c5gasN_



78.0 11
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
20c2v50A_



77.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
21d1h0ha1



not modelled 74.9 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
22d2iv2x1



not modelled 74.8 8
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
23d1tmoa1



not modelled 74.1 18
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
24d1g8ka1



not modelled 73.4 8
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
25c5mkkB_



not modelled 72.8 21
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
26d1ogya1



not modelled 72.1 14
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
27c5x5yF_



not modelled 71.9 14
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
28d1kqfa1



not modelled 71.4 24
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
29c2fhdA_



not modelled 70.4 11
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
30c1ciiA_



not modelled 69.9 16
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
31c1eu1A_



not modelled 69.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
32d1eu1a1



not modelled 68.8 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
33c2mrnB_



not modelled 68.8 11
PDB header:dna binding protein
Chain: B: PDB Molecule:antitoxin maze;
PDBTitle: structure of truncated ecmaze
34d1y5ia1



not modelled 68.4 24
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
35c6mjpF_



not modelled 66.8 13
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
36c2v45A_



not modelled 66.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
37c1oy8A_



not modelled 65.9 14
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
38d1dmra1



not modelled 65.6 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
39d1zq1a1



not modelled 65.2 21
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
40c2nyaF_



not modelled 65.0 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
41c1h5nC_



not modelled 64.3 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
42c1h0hA_



not modelled 63.7 16
PDB header:electron transport
Chain: A: PDB Molecule:formate dehydrogenase subunit alpha;
PDBTitle: tungsten containing formate dehydrogenase from desulfovibrio gigas
43c5l75G_



not modelled 63.1 18
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
44c6btmD_



not modelled 62.0 12
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
45c1tmoA_



not modelled 60.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
46c2pjhB_



not modelled 60.5 17
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
47c6cz7C_



not modelled 59.5 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:arra;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3
48c1vlfQ_



not modelled 59.3 15
PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici complexed with inhibitor 1,2,4,5-3 tetrahydroxy-benzene
49c4aayE_



not modelled 58.7 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:aroa;
PDBTitle: crystal structure of the arsenite oxidase protein complex2 from rhizobium species strain nt-26
50c1g8jC_



not modelled 58.3 8
PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
51c5t5iL_



not modelled 58.1 18
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
52d1mvfd_



not modelled 57.3 10
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
53c1kqgA_



not modelled 57.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
54c2etnA_



not modelled 56.1 24
PDB header:transcription
Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor
PDBTitle: crystal structure of thermus aquaticus gfh1
55c5x5yG_



not modelled 55.6 20
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
56c1ogyA_



not modelled 55.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
57c2ivfA_



not modelled 53.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
58c5ch7E_



not modelled 53.2 10
PDB header:oxidoreductase
Chain: E: PDB Molecule:dmso reductase family type ii enzyme, molybdopterin
PDBTitle: crystal structure of the perchlorate reductase pcrab - phe164 gate2 switch intermediate - from azospira suillum ps
59c2ki8A_



not modelled 52.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
60c2p4vA_



not modelled 52.3 12
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
61d1ylea1



not modelled 52.0 27
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:AstA-like
62d1e32a1



not modelled 51.6 20
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
63c2e7zA_



not modelled 50.5 22
PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
64c2vpyE_



not modelled 49.0 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:thiosulfate reductase;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
65d1ub4c_



not modelled 47.8 13
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
66c1y5iA_



not modelled 47.4 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
67c6ajjA_



not modelled 46.6 15
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
68c6btmB_



not modelled 43.2 26
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
69d2vbua1



not modelled 42.6 16
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
70c6mjpG_



not modelled 41.1 9
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
71c1wlfA_



not modelled 41.1 28
PDB header:protein transport
Chain: A: PDB Molecule:peroxisome biogenesis factor 1;
PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain
72c2fugC_



not modelled 39.7 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
73c6owsB_



not modelled 36.5 10
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
74c2yujA_



not modelled 36.1 15
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like;
PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
75c3bmbB_



not modelled 36.0 25
PDB header:rna binding protein
Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase;
PDBTitle: crystal structure of a new rna polymerase interacting2 protein
76c1zc1A_



not modelled 35.8 15
PDB header:protein turnover
Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1;
PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
77d2f23a2



not modelled 35.5 22
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
78c6f0kB_



not modelled 35.4 29
PDB header:membrane protein
Chain: B: PDB Molecule:fe-s-cluster-containing hydrogenase;
PDBTitle: alternative complex iii
79c3l0oA_



not modelled 34.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
80d2etna2



not modelled 32.6 22
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
81c2pn0D_



not modelled 31.2 36
PDB header:transcription
Chain: D: PDB Molecule:prokaryotic transcription elongation factor
PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea
82c2l66B_



not modelled 30.3 23
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
83c4tqxA_



not modelled 28.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:sortase;
PDBTitle: molecular basis of streptococcus mutans sortase a inhibition by2 chalcone.
84c3l0oB_



not modelled 25.8 23
PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
85c5hu4A_



not modelled 24.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:cysteine protease;
PDBTitle: cystal structure of listeria monocytogenes sortase a
86c2kw8A_



not modelled 24.3 17
PDB header:protein binding
Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein;
PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase
87d1cz5a1



not modelled 24.0 15
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
88d2d6fa1



not modelled 23.0 21
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
89c1xpuB_



not modelled 22.9 23
PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
90c4ymuC_



not modelled 22.5 10
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
91d2hyda2



not modelled 21.8 5
Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
92c3ltiA_



not modelled 19.1 38
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
93d1t2wa_



not modelled 18.4 14
Fold:Sortase
Superfamily:Sortase
Family:Sortase
94d1rqpa1



not modelled 18.3 17
Fold:Bacterial fluorinating enzyme, C-terminal domain
Superfamily:Bacterial fluorinating enzyme, C-terminal domain
Family:Bacterial fluorinating enzyme, C-terminal domain
95c2w1tB_



not modelled 17.9 14
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
96d1dzfa2



not modelled 17.0 21
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
97c4aa3A_



not modelled 16.9 7
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter,2 abcb10 (plate form)
98d1udxa3



not modelled 16.4 13
Fold:Obg GTP-binding protein C-terminal domain
Superfamily:Obg GTP-binding protein C-terminal domain
Family:Obg GTP-binding protein C-terminal domain
99c3l53F_



not modelled 16.0 25
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase;
PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica

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Transmembrane helix prediction 

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