Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0988_(-)_1105120_1106280
DateWed Jul 31 22:05:05 BST 2019
Unique Job ID435bf4f090b943e2
SequenceMRKAGLTGVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.343 Y:49.789 Z:64.097
Model (left) based on template d2icha1
Top template information
Fold:AttH-like
Superfamily:AttH-like
Family:AttH-like
Confidence and coverage
Confidence:100.0% Coverage: 82%
315 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2icha1
100.0 35
Fold:AttH-like
Superfamily:AttH-like
Family:AttH-like
2d1tvna1
66.7 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
3c2b4rQ_
62.4 24
PDB header:oxidoreductase
Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site
4d1egza_
54.6 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
5c5fipA_
54.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:gh5 cellulase;
PDBTitle: discovery and characterization of a novel thermostable and2 highly halotolerant gh5 cellulase from an icelandic hot3 spring isolate
6d1whva_
50.2 23
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
7d1g01a_
50.1 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
8c2i5pO_
47.3 20
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus
9c2d2iO_
44.9 35
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+
10c3b20R_
43.9 35
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+);
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase2 complexed with nadfrom synechococcus elongatus"
11c3docD_
43.7 35
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate dehydrogenase2 from brucella melitensis
12c4dibF_
43.3 30
PDB header:oxidoreductase
Chain: F: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 bacillus anthracis str. sterne
13c1rm4O_
42.2 30
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of recombinant photosynthetic glyceraldehyde-3-2 phosphate dehydrogenase a4 isoform, complexed with nadp
14c2pkrI_
41.5 30
PDB header:oxidoreductase
Chain: I: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase aor;
PDBTitle: crystal structure of (a+cte)4 chimeric form of photosyntetic2 glyceraldehyde-3-phosphate dehydrogenase, complexed with nadp
15c1hdgO_
41.1 40
PDB header:oxidoreductase (aldehy(d)-nad(a))
Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution
16c3h9eO_
39.9 30
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase, testis-specific;
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate
17c2x5kO_
39.9 25
PDB header:oxidoreductase
Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase;
PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli
18c1s7cA_
38.7 25
PDB header:structural genomics, oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli
19c1ihxD_
38.4 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry
20c3hjaB_
38.3 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 borrelia burgdorferi
21c6ok4A_
not modelled 36.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase (gapdh)2 from chlamydia trachomatis with bound nad
22c3sthA_
not modelled 34.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii
23c2gd1P_
not modelled 31.2 35
PDB header:oxidoreductase(aldehyde(d)-nad(a))
Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus
24c3cieC_
not modelled 27.5 42
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum
25c5sydA_
not modelled 24.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:azurin, chimeric construct;
PDBTitle: circularly permutated azurin (cpaz) based on p. aeruginosa azurin2 sequence
26c5ld5C_
not modelled 24.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of a bacterial dehydrogenase at 2.19 angstroms2 resolution
27d1xnka1
not modelled 23.3 17
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
28c2dvyA_
not modelled 22.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease pabi;
PDBTitle: crystal structure of restriction endonucleases pabi
29c2cksB_
not modelled 22.1 19
PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of thermobifida fusca2 endoglucanase cel5a (e5)
30c5uhxA_
not modelled 21.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-active enzyme;
PDBTitle: structure of cellulase cel5c_1
31d1ei5a1
not modelled 19.8 26
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
32c4xzbA_
not modelled 19.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:cela;
PDBTitle: endo-glucanase gscela p1
33c2r5iL_
not modelled 19.1 19
PDB header:viral protein
Chain: L: PDB Molecule:l1 protein;
PDBTitle: pentamer structure of major capsid protein l1 of human papilloma virus2 type 18
34c5jyfB_
not modelled 19.0 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structures of streptococcus agalactiae gbs gapdh in different2 enzymatic states
35d1r44a_
not modelled 18.8 56
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanX-like
36c5ihsA_
not modelled 17.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase, glycoside hydrolase family 5 protein;
PDBTitle: structure of chu_2103 from cytophaga hutchinsonii
37c4htyA_
not modelled 17.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: crystal structure of a metagenome-derived cellulase cel5a
38c4hcgA_
not modelled 16.7 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:cupredoxin 1;
PDBTitle: uncharacterized cupredoxin-like domain protein cupredoxin_1 with zinc2 bound from bacillus anthracis
39c5ur0B_
not modelled 15.6 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystallographic structure of glyceraldehyde-3-phosphate dehydrogenase2 from naegleria gruberi
40c4o2hB_
not modelled 15.1 41
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein bcam1869;
PDBTitle: crystal structure of bcam1869 protein (rsam homolog) from burkholderia2 cenocepacia
41c2ep7B_
not modelled 14.9 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5
42c2dcjA_
not modelled 14.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:xylanase j;
PDBTitle: a two-domain structure of alkaliphilic xynj from bacillus sp. 41m-1
43d2pyta1
not modelled 14.5 13
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
44c1cerC_
not modelled 14.5 33
PDB header:oxidoreductase (aldehyde(d)-nad(a))
Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
45c3hq4R_
not modelled 14.4 35
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution
46c1obfO_
not modelled 14.0 38
PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.7 a3 resolution.
47c5j9gB_
not modelled 13.4 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-p dehydrogenase;
PDBTitle: structure of lactobacillus acidophilus glyceraldehyde-3-phosphate2 dehydrogenase at 2.21 angstrom resolution
48c1i32D_
not modelled 12.8 33
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
49d1wuba_
not modelled 11.8 18
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
50d1y0ga_
not modelled 11.7 26
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
51c4qx6A_
not modelled 11.6 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 streptococcus agalactiae nem316 at 2.46 angstrom resolution
52c3ctrA_
not modelled 11.6 31
PDB header:hydrolase
Chain: A: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of the rrm-domain of the poly(a)-specific2 ribonuclease parn bound to m7gtp
53c5lhxA_
not modelled 11.6 22
PDB header:structural protein
Chain: A: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: pb3 domain of drosophila melanogaster plk4 (sak)
54c3pzvB_
not modelled 11.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
55c2r5kE_
not modelled 11.2 20
PDB header:viral protein
Chain: E: PDB Molecule:major capsid protein l1;
PDBTitle: pentamer structure of major capsid protein l1 of human papilloma virus2 type 11
56d7a3ha_
not modelled 11.0 14
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57c5xf9F_
not modelled 11.0 8
PDB header:oxidoreductase
Chain: F: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
58d1cc3a_
not modelled 10.6 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
59c5ixhB_
not modelled 10.6 18
PDB header:unknown function
Chain: B: PDB Molecule:ycei-like domain protein;
PDBTitle: crystal structure of burkholderia cenocepacia bcna
60c6f0kA_
not modelled 10.4 25
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
61c2aanA_
not modelled 10.1 14
PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
62c3hpeB_
not modelled 9.7 25
PDB header:transport protein
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: crystal structure of ycei (hp1286) from helicobacter pylori
63c5i2uB_
not modelled 9.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:cellulase;
PDBTitle: crystal structure of a novel halo-tolerant cellulase from soil2 metagenome
64c2z5cA_
not modelled 9.3 18
PDB header:chaperone/hydrolase
Chain: A: PDB Molecule:protein ypl144w;
PDBTitle: crystal structure of a novel chaperone complex for yeast 20s2 proteasome assembly
65c2fgsA_
not modelled 9.3 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of campylobacter jejuni ycei protein,2 structural genomics
66c3q34A_
not modelled 9.3 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ycei-like family protein;
PDBTitle: the crystal structure of ycei-like family protein from pseudomonas2 syringae
67d1ecea_
not modelled 9.0 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
68d1plqa2
not modelled 8.9 14
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
69c4f2eA_
not modelled 8.4 10
PDB header:metal transport
Chain: A: PDB Molecule:cupa;
PDBTitle: crystal structure of the streptococcus pneumoniae d39 copper chaperone2 cupa with cu(i)
70c3bvdC_
not modelled 8.4 59
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c oxidase polypeptide 2a;
PDBTitle: structure of surface-engineered cytochrome ba3 oxidase from thermus2 thermophilus under xenon pressure, 100psi 5min
71d1xmec1
not modelled 8.4 59
Fold:Single transmembrane helix
Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa
Family:Bacterial ba3 type cytochrome c oxidase subunit IIa
72c5ixgD_
not modelled 8.3 17
PDB header:unknown function
Chain: D: PDB Molecule:ycei;
PDBTitle: crystal structure of burkholderia cenocepacia bcnb
73c6amgA_
not modelled 8.2 18
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cyt p460 of nitrosomonas sp. al212
74d1miua4
not modelled 8.0 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
75c4bjrA_
not modelled 7.9 40
PDB header:ligase
Chain: A: PDB Molecule:pup--protein ligase, prokaryotic ubiquitin-like protein
PDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
76c2h47C_
not modelled 7.9 13
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:azurin;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
77c2mqcA_
not modelled 7.8 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein bvu_0925 from bacteroides vulgatus atcc2 8482
78d1ajoa_
not modelled 7.7 38
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolases family 16
79c4y66C_
not modelled 7.6 18
PDB header:cell cycle
Chain: C: PDB Molecule:mnd1;
PDBTitle: crystal structure of giardia lamblia hop2-mnd1 complex
80c4g6tB_
not modelled 7.5 18
PDB header:chaperone
Chain: B: PDB Molecule:type iii effector hopa1;
PDBTitle: structure of the hopa1-scha chaperone-effector complex
81c1kjkA_
not modelled 7.3 7
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
82d1z1ba1
not modelled 7.3 7
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
83c2x34A_
not modelled 6.7 11
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:cellulose-binding protein, x158;
PDBTitle: structure of a polyisoprenoid binding domain from saccharophagus2 degradans implicated in plant cell wall breakdown
84c4nohA_
not modelled 6.7 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipoprotein, putative;
PDBTitle: 1.5 angstrom crystal structure of putative lipoprotein from bacillus2 anthracis.
85c3iyjE_
not modelled 6.6 20
PDB header:virus
Chain: E: PDB Molecule:major capsid protein l1;
PDBTitle: bovine papillomavirus type 1 outer capsid
86c2l9uB_
not modelled 6.4 30
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
87c2l9uA_
not modelled 6.4 30
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
88c1jauA_
not modelled 6.3 50
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein (gp41);
PDBTitle: nmr solution structure of the trp-rich peptide of hiv gp412 bound to dpc micelles
89c4fd7A_
not modelled 6.3 19
PDB header:transferase
Chain: A: PDB Molecule:putative arylalkylamine n-acetyltransferase 7;
PDBTitle: crystal structure of insect putative arylalkylamine n-2 acetyltransferase 7 from the yellow fever mosquito aedes aegypt
90c4kmaA_
not modelled 6.3 41
PDB header:protein binding
Chain: A: PDB Molecule:gm14141p;
PDBTitle: crystal structure of drosophila suppressor of fused
91c6igdG_
not modelled 6.3 19
PDB header:structural protein
Chain: G: PDB Molecule:major capsid protein l1;
PDBTitle: crystal structure of hpv58/33 chimeric l1 pentamer
92c3pm6B_
not modelled 6.2 18
PDB header:lyase
Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase;
PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr
93d2c0ha1
not modelled 6.2 23
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
94d1dzla_
not modelled 6.1 20
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
95c1dzlA_
not modelled 6.1 20
PDB header:virus
Chain: A: PDB Molecule:late major capsid protein l1;
PDBTitle: l1 protein of human papillomavirus 16
96d2diga1
not modelled 6.0 23
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
97c5b0uB_
not modelled 6.0 28
PDB header:luminescent protein
Chain: B: PDB Molecule:oplophorus-luciferin 2-monooxygenase catalytic subunit;
PDBTitle: crystal structure of the mutated 19 kda protein of oplophorus2 luciferase (nanokaz)
98d1cuoa_
not modelled 5.9 16
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
99d1m1la_
not modelled 5.9 41
Fold:Suppressor of Fused, N-terminal domain
Superfamily:Suppressor of Fused, N-terminal domain
Family:Suppressor of Fused, N-terminal domain

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below