Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0992c_(-)_1108582_1109175
DateWed Jul 31 22:05:06 BST 2019
Unique Job IDba97dc0645f79560
SequenceMAMASKSALR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.915 Y:48.702 Z:45.028
Model (left) based on template c2jcbA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein;
PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489)
Confidence and coverage
Confidence:100.0% Coverage: 93%
183 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jcbA_



100.0 19
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein;
PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489)
2c3hy4A_



100.0 23
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase;
PDBTitle: structure of human mthfs with n5-iminium phosphate
3d1soua_



100.0 26
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
4c1ydmC_



100.0 23
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein yqgn;
PDBTitle: x-ray structure of northeast structural genomics target sr44
5c1u3fA_



100.0 24
PDB header:ligase
Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase;
PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087)
6d1sbqa_



100.0 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
7d1wkca_



100.0 35
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
8c5b04B_



96.7 23
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
9c3ecsD_



90.5 14
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of human eif2b alpha
10c6i3mD_



78.4 13
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
11c4zemB_



78.3 16
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif2b-like protein,
PDBTitle: crystal structure of eif2b beta from chaetomium thermophilum
12c6i7tB_



77.1 13
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: eif2b:eif2 complex
13c6i3mF_



74.8 12
PDB header:translation
Chain: F: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
14d1t9ka_



72.7 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
15c1w2wJ_



72.4 19
PDB header:isomerase
Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-phosphate2 isomerase related to regulatory eif2b subunits
16c5b04G_



71.9 10
PDB header:translation
Chain: G: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
17c2yvkA_



71.7 10
PDB header:isomerase
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
18c6a34B_



70.2 15
PDB header:isomerase
Chain: B: PDB Molecule:putative methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate isomerase from2 pyrococcus horikoshii ot3 - form i
19d1t5oa_



60.0 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
20c6musF_



39.6 38
PDB header:rna binding protein/rna
Chain: F: PDB Molecule:uncharacterized protein csm5;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
21c1vw4K_



not modelled 38.3 23
PDB header:ribosome
Chain: K: PDB Molecule:54s ribosomal protein l16, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
22c3uk7B_



not modelled 35.9 12
PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
23d1z7ma1



not modelled 35.0 20
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
24c5dboA_



not modelled 34.7 16
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
25d1k6da_



not modelled 29.3 12
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
26d1q7ra_



not modelled 28.3 11
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
27c3od1A_



not modelled 25.6 22
PDB header:transferase
Chain: A: PDB Molecule:atp phosphoribosyltransferase regulatory subunit;
PDBTitle: the crystal structure of an atp phosphoribosyltransferase regulatory2 subunit/histidyl-trna synthetase from bacillus halodurans c
28c4v19Q_



not modelled 24.8 25
PDB header:ribosome
Chain: Q: PDB Molecule:mitoribosomal protein ul16m, mrpl16;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
29c6ig0H_



not modelled 24.5 38
PDB header:rna binding protein
Chain: H: PDB Molecule:type iii-a crispr-associated ramp protein csm5;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
30d1wu7a2



not modelled 24.2 22
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
31d1e1oa2



not modelled 22.8 0
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
32d1i1qb_



not modelled 22.7 9
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
33c3rrlC_



not modelled 22.5 15
PDB header:transferase
Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
34d2e1za1



not modelled 22.3 23
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
35c3racA_



not modelled 22.1 27
PDB header:ligase
Chain: A: PDB Molecule:histidine-trna ligase;
PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446.
36d1vb5a_



not modelled 21.4 15
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
37c3bboO_



not modelled 21.3 21
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein l16;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
38c2zalD_



not modelled 20.6 50
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
39d2gfqa1



not modelled 20.5 22
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
40c2gfqC_



not modelled 19.9 22
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:upf0204 protein ph0006;
PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii
41c1jn9D_



not modelled 19.7 50
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
42c1k2xB_



not modelled 19.7 50
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
43c1k2xD_



not modelled 19.7 50
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
44c6ezoD_



not modelled 19.3 11
PDB header:membrane protein
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
45d2nv0a1



not modelled 19.3 9
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
46c2gacD_



not modelled 19.0 40
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
47c2ftcI_



not modelled 19.0 26
PDB header:ribosome
Chain: I: PDB Molecule:mitochondrial ribosomal protein l16;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
48d2j01q1



not modelled 18.9 23
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
49d1id3b_



not modelled 18.3 16
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
50d1yqea1



not modelled 18.0 15
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
51c1z7nB_



not modelled 17.8 22
PDB header:transferase
Chain: B: PDB Molecule:atp phosphoribosyltransferase regulatory subunit;
PDBTitle: atp phosphoribosyl transferase (hiszg atp-prtase) from2 lactococcus lactis with bound prpp substrate
52c4wceJ_



not modelled 17.6 28
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l16;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus
53d1qdlb_



not modelled 17.5 10
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
54c4ijnB_



not modelled 17.0 19
PDB header:transferase
Chain: B: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of an acetate kinase from mycobacterium smegmatis2 bound to amp and sulfate
55c2zalB_



not modelled 16.9 50
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
56c1jn9B_



not modelled 16.6 50
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
57c1t3mD_



not modelled 16.6 50
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
58c1t3mB_



not modelled 16.6 50
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
59d2zjrj1



not modelled 16.4 19
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
60d1ka9h_



not modelled 16.2 18
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
61c2gezF_



not modelled 15.9 60
PDB header:hydrolase
Chain: F: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
62d2j8ga2



not modelled 15.8 4
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
63c6nrb5_



not modelled 15.6 32
PDB header:chaperone
Chain: 5: PDB Molecule:prefoldin subunit 5;
PDBTitle: htric-hpfd class2
64c4zeoH_



not modelled 15.3 14
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
65c5o60N_



not modelled 15.2 21
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l16;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
66c1x3nA_



not modelled 15.1 23
PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
67c3rqsB_



not modelled 14.9 45
PDB header:oxidoreductase
Chain: B: PDB Molecule:hydroxyacyl-coenzyme a dehydrogenase, mitochondrial;
PDBTitle: crystal structure of human l-3- hydroxyacyl-coa dehydrogenase2 (ec1.1.1.35) from mitochondria at the resolution 2.0 a, northeast3 structural genomics consortium target hr487, mitochondrial protein4 partnership
68c4pv3D_



not modelled 14.7 50
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
69d1ooya1



not modelled 14.5 13
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
70c2ywdA_



not modelled 14.4 15
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
71c3ejhF_



not modelled 14.3 33
PDB header:cell adhesion
Chain: F: PDB Molecule:collagen type-i a1 chain;
PDBTitle: crystal structure of the fibronectin 8-9fni domain pair in complex2 with a type-i collagen peptide
72c6qg0G_



not modelled 14.2 10
PDB header:translation
Chain: G: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model 1)
73c3khyA_



not modelled 13.8 21
PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella tularensis2 subsp. tularensis schu s4
74d1qe0a2



not modelled 13.7 22
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
75c5bu3A_



not modelled 13.7 67
PDB header:lyase
Chain: A: PDB Molecule:pyri4;
PDBTitle: crystal structure of diels-alderase pyri4 in complex with its product
76d2gyck1



not modelled 13.4 24
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
77c5ldxh_



not modelled 13.2 55
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-ubiquinone oxidoreductase chain 1;
PDBTitle: structure of mammalian respiratory complex i, class3.
78c5ldwh_



not modelled 13.2 55
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-ubiquinone oxidoreductase chain 1;
PDBTitle: structure of mammalian respiratory complex i, class1
79c5lc5h_



not modelled 13.2 55
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-ubiquinone oxidoreductase chain 1;
PDBTitle: structure of mammalian respiratory complex i, class2
80c2issF_



not modelled 13.1 11
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
81d1kx5b_



not modelled 13.1 15
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
82d1w7ab4



not modelled 13.1 18
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
83c4ce4Q_



not modelled 12.8 26
PDB header:ribosome
Chain: Q: PDB Molecule:mrpl16;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
84c3p4iA_



not modelled 12.7 21
PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
85c2vduE_



not modelled 12.4 19
PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
86d1bbua2



not modelled 11.4 0
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
87c3d3uA_



not modelled 11.2 21
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26
88c4aqqA_



not modelled 11.0 37
PDB header:viral protein
Chain: A: PDB Molecule:l2 protein iii (penton base);
PDBTitle: dodecahedron formed of penton base protein from adenovirus ad3
89d1lbqa_



not modelled 10.8 15
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
90c1apzB_



not modelled 10.7 30
PDB header:complex (hydrolase/peptide)
Chain: B: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase complex with reaction product
91d1gk8i_



not modelled 10.7 19
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
92d1ytla1



not modelled 10.2 35
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:ACDE2-like
93c2rnmC_



not modelled 10.1 55
PDB header:protein fibril
Chain: C: PDB Molecule:small s protein;
PDBTitle: structure of the het-s(218-289) prion in its amyloid form obtained by2 solid-state nmr
94d2huec1



not modelled 9.9 15
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
95d3pmga2



not modelled 9.9 33
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
96d2hrca1



not modelled 9.8 11
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
97d1hiod_



not modelled 9.8 15
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
98d1oi4a1



not modelled 9.7 8
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
99c5mqrA_



not modelled 9.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:beta-l-arabinobiosidase;
PDBTitle: sialidase bt_1020

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below