Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0996_(-)_1112388_1113464
DateWed Jul 31 22:05:06 BST 2019
Unique Job IDca74ffe216ed40b0
SequenceMPSIPQSLLW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.176 Y:46.380 Z:22.442
Model (left) based on template c2jwaA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
Confidence and coverage
Confidence: 85.3% Coverage: 9%
32 residues ( 9% of your sequence) have been modelled with 85.3% confidence by the single highest scoring template.
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Warning: 63% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jwaA_
85.3 25
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
2c2ks1A_
83.7 25
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
3c5n9yB_
74.3 15
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
4c4kppA_
58.6 9
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
5c4k1cA_
57.4 12
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
6c1eysH_
56.4 22
PDB header:electron transport
Chain: H: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
7c5zihA_
54.8 12
PDB header:membrane protein
Chain: A: PDB Molecule:sensory opsin a,chrimson;
PDBTitle: crystal structure of the red light-activated channelrhodopsin2 chrimson.
8c6hu9u_
53.4 11
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
9c2mpnB_
53.4 5
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
10c4ev6E_
49.6 18
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
11c2mpnA_
49.4 5
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
12c2m20B_
45.0 16
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
13c6cfwD_
42.0 27
PDB header:membrane protein
Chain: D: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
14c5v2sA_
36.8 15
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
15c4zyoA_
36.3 2
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
16c6humQ_
35.1 9
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
17d2iuba2
34.9 15
Fold:Transmembrane helix hairpin
Superfamily:Magnesium transport protein CorA, transmembrane region
Family:Magnesium transport protein CorA, transmembrane region
18c1ciiA_
34.1 27
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
19c6g2jJ_
33.8 13
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-ubiquinone oxidoreductase chain 6;
PDBTitle: mouse mitochondrial complex i in the active state
20c5xtdm_
32.5 16
PDB header:oxidoreductase/electron transport
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: cryo-em structure of human respiratory complex i
21c5d92B_
not modelled 31.8 15
PDB header:membrane protein
Chain: B: PDB Molecule:af2299 protein,phosphatidylinositol synthase;
PDBTitle: structure of a phosphatidylinositolphosphate (pip) synthase from2 renibacterium salmoninarum
22c5mx2T_
not modelled 31.4 18
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
23c2n2aA_
not modelled 30.7 15
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
24c6dt0D_
not modelled 30.2 14
PDB header:transport protein
Chain: D: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of a mitochondrial calcium uniporter
25c5lnkr_
not modelled 29.2 24
PDB header:oxidoreductase
Chain: R: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
26c4tnjT_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
27c4ixqt_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
28c4ixqT_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
29c4tnjt_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
30c4tnkT_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
31c4fbyT_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: fs x-ray diffraction of photosystem ii
32c3bz1T_
not modelled 28.7 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
33c3prqT_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
34c3bz2T_
not modelled 28.7 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
35c3prrT_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
36c4fbyg_
not modelled 28.7 18
PDB header:photosynthesis
Chain: G: PDB Molecule:photosystem q(b) protein 1;
PDBTitle: fs x-ray diffraction of photosystem ii
37c4tnkt_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
38c4tnit_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
39c4ixrt_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
40c4tniT_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
41c4ixrT_
not modelled 28.7 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
42c4tnht_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
43c4tnhT_
not modelled 28.7 18
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
44c5mx2t_
not modelled 28.4 18
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
45c4pj0T_
not modelled 28.4 18
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
46c4pj0t_
not modelled 28.4 18
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
47c1s5lT_
not modelled 28.4 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
48c1s5lt_
not modelled 28.4 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
49c5ldwJ_
not modelled 28.2 13
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-ubiquinone oxidoreductase chain 6;
PDBTitle: structure of mammalian respiratory complex i, class1
50c5e7ct_
not modelled 28.0 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
51c3a0ht_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
52c5e79t_
not modelled 28.0 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
53c3a0hT_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
54c4rvyt_
not modelled 28.0 18
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
55c3a0bt_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
56c2axtT_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
57c4rvyT_
not modelled 28.0 18
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
58d2axtt1
not modelled 28.0 18
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein T, PsbT
Family:PsbT-like
59c3arcT_
not modelled 28.0 18
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
60c5e79T_
not modelled 28.0 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
61c5e7cT_
not modelled 28.0 18
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
62c3kziT_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
63c2axtt_
not modelled 28.0 18
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
64d2axtm1
not modelled 27.5 54
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein M, PsbM
Family:PsbM-like
65c4ymkA_
not modelled 26.4 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
66c4k1cB_
not modelled 26.4 9
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
67c6hwhX_
not modelled 25.7 18
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
68c6d80A_
not modelled 24.7 18
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter from n.2 fischeri bound to saposin
69c6c5wA_
not modelled 24.7 20
PDB header:membrane protein
Chain: A: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the mitochondrial calcium uniporter
70c5xtdb_
not modelled 24.6 38
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 8,
PDBTitle: cryo-em structure of human respiratory complex i
71d1e12a_
not modelled 24.2 18
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
72c3a0hm_
not modelled 22.6 46
PDB header:electron transport
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: crystal structure of i-substituted photosystem ii complex
73c2voyB_
not modelled 21.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
74c5o6vC_
not modelled 21.0 14
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
75c5dgoA_
not modelled 20.9 36
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 45 homolog;
PDBTitle: crystal structure of cell division cycle protein 45 (cdc45)
76c2na9A_
not modelled 19.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
77c2na8A_
not modelled 19.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
78c4b03A_
not modelled 18.3 11
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
79c2jagA_
not modelled 18.2 19
PDB header:membrane protein
Chain: A: PDB Molecule:halorhodopsin;
PDBTitle: l1-intermediate of halorhodopsin t203v
80c5by1A_
not modelled 18.0 17
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: h18 bat influenza ns1 rna binding domain
81c5ireA_
not modelled 17.6 8
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
82c1rh1A_
not modelled 16.9 11
PDB header:antibiotic
Chain: A: PDB Molecule:colicin b;
PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
83c3jc6E_
not modelled 16.2 27
PDB header:replication
Chain: E: PDB Molecule:cell division control protein 45;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
84c3a0bT_
not modelled 16.2 21
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
85c6bm8A_
not modelled 16.2 16
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
86c3ipdB_
not modelled 15.6 6
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
87c2n1pA_
not modelled 15.2 18
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
88d2r6gf1
not modelled 15.1 7
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
89c6eyuA_
not modelled 15.0 23
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
90c2bbjB_
not modelled 14.9 20
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
91c2lcoA_
not modelled 14.6 24
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles
92c4zr0A_
not modelled 14.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:ceramide very long chain fatty acid hydroxylase scs7;
PDBTitle: full length scs7p (only hydroxylase domain visible)
93c3arct_
not modelled 14.3 18
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
94c6j9mA_
not modelled 14.3 41
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: nmebh+acriic2
95c6qpbB_
not modelled 14.0 8
PDB header:membrane protein
Chain: B: PDB Molecule:anoctamin-6;
PDBTitle: cryo-em structure of calcium-free mtmem16f lipid scramblase in2 digitonin
96c5wsnC_
not modelled 13.2 19
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
97d1aila_
not modelled 13.0 33
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:N-terminal, RNA-binding domain of nonstructural protein NS1
98c6agfB_
not modelled 12.7 8
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
99c5xnlM_
not modelled 12.5 38
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum

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Transmembrane helix prediction 

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