Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0999_(-)_1115771_1116529
DateWed Jul 31 22:05:06 BST 2019
Unique Job IDaefa88ccd87a2986
SequenceVRPPLAPQFA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.172 Y:44.228 Z:43.196
Model (left) based on template c4tmdA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray structure of putative uncharacterized protein (rv0999 ortholog)2 from mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 74%
187 residues ( 74% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tmdA_
100.0 58
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray structure of putative uncharacterized protein (rv0999 ortholog)2 from mycobacterium smegmatis
2c4h69A_
49.6 33
PDB header:isomerase
Chain: A: PDB Molecule:allene oxide cyclase;
PDBTitle: crystal structure of the allene oxide cyclase 2 from physcomitrella2 patens complexed with substrate analog
3d1zvca1
48.2 29
Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
4d2brja1
25.7 25
Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
5c2dzqA_
17.0 30
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna
6c2ed2A_
16.4 17
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna
7c2dn4A_
16.2 17
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna
8c2d99A_
16.2 30
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna
9d1q60a_
16.2 26
Fold:GTF2I-like repeat
Superfamily:GTF2I-like repeat
Family:GTF2I-like repeat
10c2dn5A_
15.4 26
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna
11c2ejeA_
14.8 30
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna
12c1af7A_
14.4 33
PDB header:methyltransferase
Chain: A: PDB Molecule:chemotaxis receptor methyltransferase cher;
PDBTitle: cher from salmonella typhimurium
13c2e3lA_
14.1 22
PDB header:transcription
Chain: A: PDB Molecule:transcription factor gtf2ird2 beta;
PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna
14c2dzrA_
14.1 26
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna
15c5xlyA_
12.7 56
PDB header:transferase
Chain: A: PDB Molecule:chemotaxis protein methyltransferase 1;
PDBTitle: crystal structure of cher1 in complex with c-di-gmp-bound mapz
16c5mz61_
12.1 27
PDB header:cell cycle
Chain: 1: PDB Molecule:separase;
PDBTitle: cryo-em structure of a separase-securin complex from caenorhabditis2 elegans at 3.8 a resolution
17c5u1sA_
11.3 50
PDB header:hydrolase
Chain: A: PDB Molecule:separin;
PDBTitle: crystal structure of the saccharomyces cerevisiae separase-securin2 complex at 3.0 angstrom resolution
18c2m9lA_
10.6 67
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-tp1a;
PDBTitle: solution structure of protoxin-1
19c2yuvA_
10.5 11
PDB header:cell adhesion
Chain: A: PDB Molecule:myosin-binding protein c, slow-type;
PDBTitle: solution structure of 2nd immunoglobulin domain of slow2 type myosin-binding protein c
20c6nu9A_
9.7 22
PDB header:viral protein
Chain: A: PDB Molecule:zinc-binding non-structural protein;
PDBTitle: crystal structure of a zinc-binding non-structural protein from the2 hepatitis e virus
21d1wmhb_
not modelled 9.7 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
22c3ld1A_
not modelled 8.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:replicase polyprotein 1a;
PDBTitle: crystal structure of ibv nsp2a
23c5ftwA_
not modelled 8.4 50
PDB header:transferase
Chain: A: PDB Molecule:chemotaxis protein methyltransferase;
PDBTitle: crystal structure of glutamate o-methyltransferase in2 complex with s- adenosyl-l-homocysteine (sah) from3 bacillus subtilis
24c3nuhB_
not modelled 7.7 32
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
25c2fvnA_
not modelled 7.3 24
PDB header:cell adhesion
Chain: A: PDB Molecule:protein afad;
PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins
26c3zrhA_
not modelled 7.3 32
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin thioesterase zranb1;
PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
27c4phxE_
not modelled 7.1 22
PDB header:cell adhesion
Chain: E: PDB Molecule:protein aggb;
PDBTitle: crystal structure of aggb, the minor subunit of aggregative adherence2 fimbriae type i from the escherichia coli o4h104
28c2ehdB_
not modelled 6.5 6
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family;
PDBTitle: crystal structure analysis of oxidoreductase
29c5fc2A_
not modelled 6.0 63
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:pamk, peptide containing a phospho-serine;
PDBTitle: structure of a separase in complex with a pamk peptide containing a2 phospho-serine
30c4bm5A_
not modelled 5.9 28
PDB header:protein transport
Chain: A: PDB Molecule:similar to chloroplast inner membrane protein tic110;
PDBTitle: chloroplast inner membrane protein tic110
31c2myxA_
not modelled 5.9 12
PDB header:ubiquitin-binding protein
Chain: A: PDB Molecule:coupling of ubiquitin conjugation to er degradation protein
PDBTitle: structure of the cue domain of yeast cue1
32c5sujB_
not modelled 5.8 19
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg2148 from legionella2 pneumophila
33c2jf1A_
not modelled 5.7 25
PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
34d1te1b_
not modelled 5.3 27
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
35c2vulA_
not modelled 5.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:gh11 xylanase;
PDBTitle: thermostable mutant of environmentally isolated gh112 xylanase

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