Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1001_(arcA)_1117189_1118397
DateWed Jul 31 22:05:07 BST 2019
Unique Job ID178f5ac734d3d895
SequenceVGVELGSNSE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:69.208 Y:65.371 Z:48.023
Model (left) based on template d1rxxa_
Top template information
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Arginine deiminase
Confidence and coverage
Confidence:100.0% Coverage: 98%
395 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1rxxa_



100.0 39
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Arginine deiminase
2c4bofA_



100.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from group a streptococcus
3d1s9ra_



100.0 30
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Arginine deiminase
4c4e4jJ_



100.0 30
PDB header:hydrolase
Chain: J: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from mycoplasma penetrans
5c5wpiB_



100.0 16
PDB header:transferase
Chain: B: PDB Molecule:hsva;
PDBTitle: the virulence-associated protein hsva from the fire blight pathogen2 erwinia amylovora is a polyamine amidinotransferase
6d1bwda_



100.0 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Amidinotransferase
7c8jdwA_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase);
PDBTitle: crystal structure of human l-arginine:glycine amidinotransferase in2 complex with l-alanine
8c1jdwA_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase;
PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis
9d1jdwa_



100.0 17
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Amidinotransferase
10c3i4aA_



100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:n(g),n(g)-dimethylarginine dimethylaminohydrolase 1;
PDBTitle: crystal structure of dimethylarginine dimethylaminohydrolase-1 (ddah-2 1) in complex with n5-(1-iminopropyl)-l-ornithine
11c2ci6A_



100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:ng, ng-dimethylarginine dimethylaminohydrolase 1;
PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase i bound with zinc low ph
12d1h70a_



100.0 23
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Dimethylarginine dimethylaminohydrolase DDAH
13c6b2wB_



99.6 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
14d2ewoa1



99.6 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
15d1xkna_



99.6 19
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
16d1zbra1



99.5 19
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
17c2jerG_



99.5 21
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
18d2jera1



99.5 19
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
19d1vkpa_



99.5 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
20d2cmua1



99.5 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
21c4ytgA_



not modelled 99.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:peptidylarginine deiminase;
PDBTitle: crystal structure of porphyromonas gingivalis peptidylarginine2 deiminase (ppad) mutant c351a in complex with dipeptide met-arg.
22d2dexx3



not modelled 94.2 12
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
23c4n2gA_



not modelled 94.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
24c4n2kA_



not modelled 93.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (q350a, 0 mm ca2+)
25c5hp5A_



not modelled 93.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-1;
PDBTitle: srtucture of human peptidylarginine deiminase type i (pad1)
26c2dexX_



not modelled 92.7 13
PDB header:hydrolase
Chain: X: PDB Molecule:protein-arginine deiminase type iv;
PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17
27d2ebfx2



not modelled 46.3 17
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
28c6rdu2_



not modelled 43.8 13
PDB header:proton transport
Chain: 2: PDB Molecule:asa-2: polytomella f-atp synthase associated subunit 2;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
29c4o9uB_



not modelled 42.9 46
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
30d1d4oa_



not modelled 40.7 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
31d1pnoa_



not modelled 40.7 38
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
32c4rrfD_



not modelled 39.6 22
PDB header:ligase
Chain: D: PDB Molecule:threonine--trna ligase;
PDBTitle: editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
33c1pt9B_



not modelled 38.9 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
34c2bruC_



not modelled 37.9 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
35c2hl2A_



not modelled 37.7 25
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate
36d1iuka_



not modelled 37.1 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
37c4k2bA_



not modelled 32.5 15
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
38c3zs7A_



not modelled 30.1 24
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from trypanosoma brucei
39d1daaa_



not modelled 29.5 11
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
40c3ff4A_



not modelled 26.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
41c4ovkA_



not modelled 26.7 24
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic solute binding protein from2 veillonella parvula dsm 2008
42c1xtzA_



not modelled 26.4 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes
43c4lhdB_



not modelled 24.6 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine dehydrogenase [decarboxylating];
PDBTitle: crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
44d1u6ma_



not modelled 23.9 10
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
45d1ynha1



not modelled 23.5 20
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Succinylarginine dihydrolase-like
46d2itba1



not modelled 23.4 25
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
47c3u7jA_



not modelled 23.1 35
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
48c4inpA_



not modelled 22.5 24
PDB header:transport protein
Chain: A: PDB Molecule:iron (iii) abc transporter, periplasmic iron-binding
PDBTitle: the crystal structure of helicobacter pylori ceue (hp1561) with ni(ii)2 bound
49c4hn9B_



not modelled 22.4 24
PDB header:transport protein
Chain: B: PDB Molecule:iron complex transport system substrate-binding protein;
PDBTitle: crystal structure of iron abc transporter solute-binding protein from2 eubacterium eligens
50c4x84C_



not modelled 21.5 30
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
51c4yajA_



not modelled 21.4 23
PDB header:ligase
Chain: A: PDB Molecule:alpha subunit of acetyl-coenzyme a synthetase
PDBTitle: ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a2 synthetase 1 (apo form)
52c4ce5A_



not modelled 20.9 18
PDB header:transferase
Chain: A: PDB Molecule:at-omegata;
PDBTitle: first crystal structure of an (r)-selective omega-transaminase2 from aspergillus terreus
53c5ux1D_



not modelled 20.5 28
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
54c4nmlA_



not modelled 19.4 32
PDB header:isomerase
Chain: A: PDB Molecule:ribulose 5-phosphate isomerase;
PDBTitle: 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid
55c3wwjE_



not modelled 19.3 23
PDB header:transferase
Chain: E: PDB Molecule:(r)-amine transaminase;
PDBTitle: crystal structure of an engineered sitagliptin-producing transaminase,2 ata-117-rd11
56c4rrcA_



not modelled 18.1 17
PDB header:ligase
Chain: A: PDB Molecule:probable threonine--trna ligase 2;
PDBTitle: n-terminal editing domain of threonyl-trna synthetase from aeropyrum2 pernix with l-thr3aa (snapshot 3)
57c2e58D_



not modelled 15.4 29
PDB header:transferase
Chain: D: PDB Molecule:mnmc2;
PDBTitle: crystal structure of mnmc2 from aquifex aeolicus
58c5cm0A_



not modelled 14.6 14
PDB header:transferase
Chain: A: PDB Molecule:branched-chain transaminase;
PDBTitle: crystal structure of branched-chain aminotransferase from thermophilic2 archaea geoglobus acetivorans
59c5dlcC_



not modelled 14.6 26
PDB header:transferase
Chain: C: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase2 from pseudomonas aeruginosa
60c6eddB_



not modelled 14.2 10
PDB header:transferase
Chain: B: PDB Molecule:acetyltransferase pa3944;
PDBTitle: crystal structure of a gnat superfamily pa3944 acetyltransferase in2 complex with coa (p1 space group)
61d1qwga_



not modelled 13.6 25
Fold:TIM beta/alpha-barrel
Superfamily:(2r)-phospho-3-sulfolactate synthase ComA
Family:(2r)-phospho-3-sulfolactate synthase ComA
62d2aeea1



not modelled 13.4 22
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
63c4d6yA_



not modelled 13.4 24
PDB header:signaling protein
Chain: A: PDB Molecule:bacterial regulatory, fis family protein;
PDBTitle: crystal structure of the receiver domain of ntrx from2 brucella abortus in complex with beryllofluoride and3 magnesium
64c1r0lD_



not modelled 13.3 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis2 in complex with nadph
65c5ix3A_



not modelled 13.2 6
PDB header:transferase
Chain: A: PDB Molecule:diamine n-acetyltransferase;
PDBTitle: crystal structure of n-acetyltransferase from staphylococcus aureus.
66d1m5wa_



not modelled 13.2 24
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
67c2z14A_



not modelled 13.1 16
PDB header:signaling protein
Chain: A: PDB Molecule:ef-hand domain-containing family member c2;
PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein
68d1f52a1



not modelled 12.8 11
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Glutamine synthetase, N-terminal domain
Family:Glutamine synthetase, N-terminal domain
69c5b6aA_



not modelled 12.7 18
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase pdxy;
PDBTitle: structure of pyridoxal kinasefrom pseudomonas aeruginosa
70c1wv9B_



not modelled 12.3 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
71d1liua2



not modelled 12.3 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
72d1xhfa1



not modelled 12.1 14
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
73d1jkea_



not modelled 11.9 21
Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
74c1nl0G_



not modelled 11.6 58
PDB header:immune system
Chain: G: PDB Molecule:factor ix;
PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12
75d1gr0a2



not modelled 11.5 31
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
76d1tjna_



not modelled 11.4 17
Fold:Chelatase-like
Superfamily:Chelatase
Family:CbiX-like
77c1tjnA_



not modelled 11.4 17
PDB header:lyase
Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase;
PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus
78c3u0gA_



not modelled 11.1 18
PDB header:transferase
Chain: A: PDB Molecule:putative branched-chain amino acid aminotransferase ilve;
PDBTitle: crystal structure of branched-chain amino acid aminotransferase from2 burkholderia pseudomallei
79c4s1hA_



not modelled 11.0 15
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: pyridoxal kinase of entamoeba histolytica with adp
80c3a14B_



not modelled 10.9 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
81c5uidC_



not modelled 10.8 18
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase tlmj;
PDBTitle: the crystal structure of an aminotransferase tlmj from2 streptoalloteichus hindustanus
82c2zu8A_



not modelled 10.6 19
PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii
83c2x4bA_



not modelled 10.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
84c4m0jA_



not modelled 10.3 18
PDB header:transferase
Chain: A: PDB Molecule:d-amino acid aminotransferase;
PDBTitle: crystal structure of a d-amino acid aminotransferase from burkholderia2 thailandensis e264
85d1dcfa_



not modelled 10.2 31
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
86c4rkmK_



not modelled 10.1 24
PDB header:unknown function
Chain: K: PDB Molecule:mcca;
PDBTitle: wolinella succinogenes octaheme sulfite reductase mcca, form i
87c2rdmB_



not modelled 10.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
88c3qb8A_



not modelled 9.9 12
PDB header:transferase
Chain: A: PDB Molecule:a654l protein;
PDBTitle: paramecium chlorella bursaria virus1 putative orf a654l is a polyamine2 acetyltransferase
89c5joqA_



not modelled 9.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:lmo2184 protein;
PDBTitle: crystal structure of an abc transporter substrate-binding protein from2 listeria monocytogenes egd-e
90d1p0sl2



not modelled 9.6 58
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
91d1zh2a1



not modelled 9.5 18
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
92c3otrC_



not modelled 9.5 16
PDB header:lyase
Chain: C: PDB Molecule:enolase;
PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii
93c5khlB_



not modelled 9.4 24
PDB header:transport protein
Chain: B: PDB Molecule:hemin abc transporter, periplasmic hemin-binding protein
PDBTitle: crystal structure of periplasmic heme binding protein hutb of vibrio2 cholerae
94d2fiaa1



not modelled 9.3 7
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
95d1gmua2



not modelled 9.3 23
Fold:Ferredoxin-like
Superfamily:Urease metallochaperone UreE, C-terminal domain
Family:Urease metallochaperone UreE, C-terminal domain
96c2wnsB_



not modelled 9.0 20
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp)
97c3hdoB_



not modelled 8.9 14
PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
98d1xlqa1



not modelled 8.8 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
99c4p9eA_



not modelled 8.8 30
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form

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Transmembrane helix prediction 

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