Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1002c_(-)_1118432_1119943
DateWed Jul 31 22:05:07 BST 2019
Unique Job IDbc23222bdb69e11b
SequenceVVPVVSPGPL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:86.053 Y:92.809 Z:49.014
Model (left) based on template c6p25A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
Confidence and coverage
Confidence:100.0% Coverage: 91%
458 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6p25A_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
2c6p2rB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
3c5f15A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
4c3rceA_



99.8 10
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
5c3wajA_



99.8 17
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
6c6eznF_



99.5 11
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
7c5ir6B_



19.5 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
8c5nf8A_



16.2 6
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
9c5i6cB_



13.4 23
PDB header:transport protein
Chain: B: PDB Molecule:uric acid-xanthine permease;
PDBTitle: the structure of the eukaryotic purine/h+ symporter, uapa, in complex2 with xanthine
10d1t33a2



13.3 16
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
11d1h5oa_



10.9 44
Fold:Defensin-like
Superfamily:Defensin-like
Family:Myotoxin
12c1z99A_



10.9 44
PDB header:toxin
Chain: A: PDB Molecule:crotamine;
PDBTitle: solution structure of crotamine, a myotoxin from crotalus2 durissus terrificus
13c3b6eA_



10.6 29
PDB header:hydrolase
Chain: A: PDB Molecule:interferon-induced helicase c domain-containing protein 1;
PDBTitle: crystal structure of human dech-box rna helicase mda5 (melanoma2 differentiation-associated protein 5), dech-domain
14c3hfxA_



10.3 29
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
15c2l34B_



9.4 28
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
16c4wolA_



9.4 28
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
17d1yksa1



9.2 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
18c4wolB_



9.2 28
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
19c4wolC_



9.2 28
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
20c4wo1B_



9.2 28
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
21c4wo1A_



not modelled 9.2 28
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
22c4wo1C_



not modelled 9.2 28
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
23c4wo1D_



not modelled 9.2 28
PDB header:signaling protein
Chain: D: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
24c6eklB_



not modelled 9.1 70
PDB header:replication
Chain: B: PDB Molecule:chromosome alignment-maintaining phosphoprotein 1;
PDBTitle: crystal structure of mammalian rev7 in complex with human chromosome2 alignment-maintaining phosphoprotein 1
25c6ekjB_



not modelled 9.1 70
PDB header:replication
Chain: B: PDB Molecule:chromosome alignment-maintaining phosphoprotein 1;
PDBTitle: crystal structure of mammalian rev7 in complex with human chromosome2 alignment-maintaining phosphoprotein 1
26c5gjqY_



not modelled 8.6 21
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
27c6bvvB_



not modelled 8.5 50
PDB header:transport protein
Chain: B: PDB Molecule:protein w;
PDBTitle: nipah virus w protein c-terminus in complex with importin alpha 3
28c5firH_



not modelled 7.9 27
PDB header:hydrolase
Chain: H: PDB Molecule:paxt-1;
PDBTitle: crystal structure of c. elegans xrn2 in complex with the2 xrn2-binding domain of paxt-1
29c3c67B_



not modelled 7.7 6
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
30c5xhbA_



not modelled 7.5 25
PDB header:immune system
Chain: A: PDB Molecule:nisin immunity protein;
PDBTitle: crystal structure of the full length of nisi in a lipid free form, the2 nisin immunity protein, from lactococcus lactis
31c5d2mG_



not modelled 7.5 70
PDB header:ligase,protein binding
Chain: G: PDB Molecule:zinc finger protein 451;
PDBTitle: complex between human sumo2-rangap1, ubc9 and znf451
32c6hu9s_



not modelled 7.5 23
PDB header:oxidoreductase/electron transport
Chain: S: PDB Molecule:cytochrome b-c1 complex subunit 8;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
33c6hu9g_



not modelled 7.5 23
PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
34d2e74a1



not modelled 7.3 16
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
35d1pcfa_



not modelled 7.2 15
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
36d1e2wa1



not modelled 7.2 55
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
37c2l35B_



not modelled 7.1 30
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
38d1hcza1



not modelled 7.1 27
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
39c2rbdB_



not modelled 7.0 16
PDB header:structural protein
Chain: B: PDB Molecule:bh2358 protein;
PDBTitle: crystal structure of a putative spore coat protein (bh2358) from2 bacillus halodurans c-125 at 1.54 a resolution
40c2l34A_



not modelled 7.0 30
PDB header:protein binding
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
41c5uxgB_



not modelled 6.9 13
PDB header:lyase
Chain: B: PDB Molecule:aldehyde deformylating oxygenase;
PDBTitle: protein 84 with aldehyde deformylating oxygenase activity from2 sulfolobus tokodaii (monoclinic)
42c6hwhb_



not modelled 6.7 7
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
43d1tu2b1



not modelled 6.7 55
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
44c1q90A_



not modelled 6.7 55
PDB header:photosynthesis
Chain: A: PDB Molecule:apocytochrome f;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
45c1e2vB_



not modelled 6.7 55
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
46c3mhpC_



not modelled 6.6 42
PDB header:oxidoreductase
Chain: C: PDB Molecule:tic62_peptide;
PDBTitle: fnr-recruitment to the thylakoid
47d1ci3m1



not modelled 6.6 55
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
48c2momC_



not modelled 6.6 31
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
49c2momB_



not modelled 6.6 31
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
50c6iehB_



not modelled 6.5 75
PDB header:rna binding protein
Chain: B: PDB Molecule:exosome rna helicase mtr4;
PDBTitle: crystal structures of the hmtr4-nrde2 complex
51d2fwra2



not modelled 6.4 63
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
52c5m0jH_



not modelled 6.4 50
PDB header:rna binding protein
Chain: H: PDB Molecule:swi5-dependent ho expression protein 2,swi5-dependent ho
PDBTitle: crystal structure of the cytoplasmic complex with she2p, she3p, and2 the ash1 mrna e3-localization element
53d1vf5c1



not modelled 6.4 55
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
54c6iegA_



not modelled 6.4 75
PDB header:rna binding protein
Chain: A: PDB Molecule:exosome rna helicase mtr4;
PDBTitle: crystal structure of human mtr4
55c1zsgB_



not modelled 6.3 33
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 1;
PDBTitle: beta pix-sh3 complexed with an atypical peptide from alpha-2 pak
56c2n1pA_



not modelled 6.2 9
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
57c6dhxC_



not modelled 6.2 44
PDB header:antitoxin
Chain: C: PDB Molecule:tipc2;
PDBTitle: structure of tipc2 from streptococcus intermedius b196
58c3tsjA_



not modelled 6.1 21
PDB header:allergen, oxidoreductase
Chain: A: PDB Molecule:pollen allergen phl p 4;
PDBTitle: crystal structure of phl p 4, a grass pollen allergen with glucose2 dehydrogenase activity
59c2kwzA_



not modelled 6.1 33
PDB header:viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: solution structure of ns2 [60-99]
60c4k05B_



not modelled 6.0 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical exported protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0371) from2 bacteroides fragilis nctc 9343 at 1.65 a resolution
61c4b19A_



not modelled 6.0 17
PDB header:toxin
Chain: A: PDB Molecule:pepa1;
PDBTitle: s. aureus pepa1 nmr structure
62c5l6nI_



not modelled 6.0 40
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
63c2e75C_



not modelled 5.9 55
PDB header:photosynthesis
Chain: C: PDB Molecule:apocytochrome f;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
64c5fmfY_



not modelled 5.8 42
PDB header:transcription
Chain: Y: PDB Molecule:dna repair helicase rad3;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
65c2n73B_



not modelled 5.7 50
PDB header:transferase/transferase regulator
Chain: B: PDB Molecule:phosphatidylinositol 4-kinase beta;
PDBTitle: solution structure of the acbd3:pi4kb complex
66c2mkvA_



not modelled 5.7 23
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
67c1ctmA_



not modelled 5.7 27
PDB header:electron transport(cytochrome)
Chain: A: PDB Molecule:cytochrome f;
PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation
68c3iz3D_



not modelled 5.7 14
PDB header:virus
Chain: D: PDB Molecule:viral structural protein 5;
PDBTitle: cryoem structure of cytoplasmic polyhedrosis virus
69c1tu2B_



not modelled 5.6 55
PDB header:electron transport
Chain: B: PDB Molecule:apocytochrome f;
PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
70c2n2eA_



not modelled 5.5 22
PDB header:lantibiotic-binding protein
Chain: A: PDB Molecule:nisin immunity protein;
PDBTitle: nmr solution structure of the c-terminal domain of nisi, a lipoprotein2 from lactococcus lactis which confers immunity against nisin
71d1dysa_



not modelled 5.4 27
Fold:7-stranded beta/alpha barrel
Superfamily:Glycosyl hydrolases family 6, cellulases
Family:Glycosyl hydrolases family 6, cellulases
72c3l9oA_



not modelled 5.4 75
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
73c5fvjA_



not modelled 5.4 22
PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase;
PDBTitle: crystal structure of tact (trna acetylating toxin) from salmonella
74c2kluA_



not modelled 5.3 14
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
75c2lomA_



not modelled 5.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
76c4wwrE_



not modelled 5.3 38
PDB header:transport protein
Chain: E: PDB Molecule:large proline-rich protein bag6;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
77c2jxmB_



not modelled 5.3 36
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
78c3chtA_



not modelled 5.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
79d2eyqa3



not modelled 5.3 50
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
80c1bzgA_



not modelled 5.3 23
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
81c4aghA_



not modelled 5.3 8
PDB header:transcription
Chain: A: PDB Molecule:mosub1, transcription cofactor;
PDBTitle: structural features of ssdna binding protein mosub1 from magnaporthe2 oryzae
82c4xgtA_



not modelled 5.2 63
PDB header:hydrolase
Chain: A: PDB Molecule:frq-interacting rna helicase;
PDBTitle: structure of rna helicase frh a critical component of the neurospora2 crassa circadian clock
83c4elnA_



not modelled 5.1 40
PDB header:unknown function
Chain: A: PDB Molecule:type iii effector xopai;
PDBTitle: crystal structure of the type iii effector xopai from xanthomonas2 axonopodis pv. citri
84c5cowA_



not modelled 5.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: c. remanei pgl-1 dimerization domain
85c3bvdC_



not modelled 5.1 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c oxidase polypeptide 2a;
PDBTitle: structure of surface-engineered cytochrome ba3 oxidase from thermus2 thermophilus under xenon pressure, 100psi 5min
86d1xmec1



not modelled 5.1 24
Fold:Single transmembrane helix
Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa
Family:Bacterial ba3 type cytochrome c oxidase subunit IIa

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