Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1005c_(pabB)_1122226_1123602
DateWed Jul 31 22:05:07 BST 2019
Unique Job IDb668d182453c10b0
SequenceLNLAWELSTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.779 Y:64.035 Z:55.690
Model (left) based on template c4penA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component 1;
PDBTitle: structure of anthranilate synthase component i (trpe) from2 mycobacterium tuberculosis with inhibitor bound
Confidence and coverage
Confidence:100.0% Coverage: 90%
411 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4penA_



100.0 27
PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component 1;
PDBTitle: structure of anthranilate synthase component i (trpe) from2 mycobacterium tuberculosis with inhibitor bound
2d1i7qa_



100.0 24
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
3d1i1qa_



100.0 25
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
4d1qdla_



100.0 28
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
5c5kckA_



100.0 23
PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component i;
PDBTitle: crystal structure of anthranilate synthase component i from2 streptococcus pneumoniae tigr4
6c4grhA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:aminodeoxychorismate synthase;
PDBTitle: crystal structure of pabb of stenotrophomonas maltophilia
7d2g5fa1



100.0 22
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
8d1k0ga_



100.0 29
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
9c2i6yA_



100.0 22
PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component i, putative;
PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti
10d2fn0a1



100.0 24
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
11c3h9mA_



100.0 27
PDB header:lyase
Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i;
PDBTitle: crystal structure of para-aminobenzoate synthetase, component i from2 cytophaga hutchinsonii
12c3os6A_



100.0 24
PDB header:isomerase
Chain: A: PDB Molecule:isochorismate synthase dhbc;
PDBTitle: crystal structure of putative 2,3-dihydroxybenzoate-specific2 isochorismate synthase, dhbc from bacillus anthracis.
13c3r74B_



100.0 22
PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
14c3hwoB_



100.0 20
PDB header:isomerase
Chain: B: PDB Molecule:isochorismate synthase entc;
PDBTitle: crystal structure of escherichia coli enterobactin-specific2 isochorismate synthase entc in complex with isochorismate
15d3bzna1



100.0 23
Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
16c3gseA_



100.0 22
PDB header:isomerase
Chain: A: PDB Molecule:menaquinone-specific isochorismate synthase;
PDBTitle: crystal structure of menaquinone-specific isochorismate synthase from2 yersinia pestis co92
17c3nqkA_



26.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a structural genomics, unknown function2 (bacova_03322) from bacteroides ovatus at 2.61 a resolution
18d1cvra1



24.0 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Gingipain R (RgpB), C-terminal domain
19d1rp3b_



19.3 30
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Anti-sigma factor FlgM
Family:Anti-sigma factor FlgM
20c4k6nA_



19.1 8
PDB header:lyase
Chain: A: PDB Molecule:aminodeoxychorismate lyase;
PDBTitle: crystal structure of yeast 4-amino-4-deoxychorismate lyase
21c5jnoB_



not modelled 16.1 24
PDB header:cell cycle
Chain: B: PDB Molecule:dna excision repair protein ercc-6-like;
PDBTitle: crystal structure of the bd1-ntpr complex from bend3 and pich
22c2km1A_



not modelled 14.0 22
PDB header:protein binding
Chain: A: PDB Molecule:protein dre2;
PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2
23c3vf0A_



not modelled 13.2 17
PDB header:cell adhesion/protein binding
Chain: A: PDB Molecule:vinculin;
PDBTitle: raver1 in complex with metavinculin l954 deletion mutant
24d1hxra_



not modelled 12.6 22
Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
25d2fu5a1



not modelled 12.0 22
Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
26d1qkra_



not modelled 11.6 17
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
27c4w5xA_



not modelled 11.2 18
PDB header:viral protein
Chain: A: PDB Molecule:late protein h7;
PDBTitle: the structure of vaccina virus h7 protein displays a novel2 phosphoinositide binding fold required for membrane biogenesis
28c4aq2I_



not modelled 10.0 27
PDB header:oxidoreductase
Chain: I: PDB Molecule:homogentisate 1,2-dioxygenase;
PDBTitle: resting state of homogentisate 1,2-dioxygenase
29c4oltA_



not modelled 9.4 36
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: chitosanase complex structure
30c2hlwA_



not modelled 8.9 17
PDB header:ligase, signaling protein
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 1;
PDBTitle: solution structure of the human ubiquitin-conjugating2 enzyme variant uev1a
31d1xe7a_



not modelled 8.7 41
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
32c5f5tD_



not modelled 8.2 62
PDB header:splicing
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the prp38-mfap1 complex of chaetomium2 thermophilum
33d2obpa1



not modelled 8.2 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ReutB4095-like
34c2xt6B_



not modelled 8.1 29
PDB header:lyase
Chain: B: PDB Molecule:2-oxoglutarate decarboxylase;
PDBTitle: crystal structure of mycobacterium smegmatis alpha-ketoglutarate2 decarboxylase homodimer (orthorhombic form)
35c1wazA_



not modelled 7.9 57
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
36c5foiB_



not modelled 7.8 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:mycinamicin viii c21 methyl hydroxylase;
PDBTitle: crystal structure of mycinamicin viii c21 methyl hydroxylase mycci2 from micromonospora griseorubida bound to mycinamicin viii
37c1wqkA_



not modelled 7.8 38
PDB header:toxin
Chain: A: PDB Molecule:toxin apetx1;
PDBTitle: solution structure of apetx1, a specific peptide inhibitor2 of human ether-a-go-go-related gene potassium channels3 from the venom of the sea anemone anthopleura4 elegantissima: a new fold for an herg toxin
38c2edgA_



not modelled 7.7 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
39d2ffca1



not modelled 7.5 16
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
40c3dzaB_



not modelled 7.3 32
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized putative membrane protein;
PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution
41d1d5ta2



not modelled 7.1 21
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GDI-like
42c2lt2A_



not modelled 6.4 16
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr structure of ba42 protein from the psychrophilic bacteria bizionia2 argentinensis sp. nov.
43c4nm0B_



not modelled 6.4 30
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of peptide inhibitor-free gsk-3/axin complex
44c3c66B_



not modelled 6.3 30
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
45c3oaiB_



not modelled 6.2 10
PDB header:membrane protein, cell adhesion
Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0;
PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero
46c4nm7B_



not modelled 6.1 35
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of gsk-3/axin complex bound to phosphorylated wnt2 receptor lrp6 e-motif
47c4nm3B_



not modelled 6.1 35
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of gsk-3/axin complex bound to phosphorylated n-2 terminal auto-inhibitory ps9 peptide
48c4nu1B_



not modelled 6.1 35
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of a transition state mimic of the gsk-3/axin2 complex bound to phosphorylated n-terminal auto-inhibitory ps93 peptide
49c4nm5B_



not modelled 6.1 35
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of gsk-3/axin complex bound to phosphorylated wnt2 receptor lrp6 c-motif
50d1eyba_



not modelled 6.0 28
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Homogentisate dioxygenase
51c1ey2A_



not modelled 6.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:homogentisate 1,2-dioxygenase;
PDBTitle: human homogentisate dioxygenase with fe(ii)
52c4anrA_



not modelled 5.6 19
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
53d1zofa1



not modelled 5.6 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
54d1ofcx1



not modelled 5.6 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
55c6a2uA_



not modelled 5.5 24
PDB header:signaling protein/oxidoreductase
Chain: A: PDB Molecule:twin-arginine translocation pathway signal;
PDBTitle: crystal structure of gamma-alpha subunit complex from burkholderia2 cepacia fad glucose dehydrogenase
56c6bkbE_



not modelled 5.3 25
PDB header:immune system
Chain: E: PDB Molecule:polyprotein;
PDBTitle: structure of hepatitis c virus envelope glycoprotein e2 core from2 genotype 6a bound to broadly neutralizing antibody ar3a
57c5n81B_



not modelled 5.3 16
PDB header:ligase
Chain: B: PDB Molecule:tyrocidine synthase 1;
PDBTitle: crystal structure of an engineered tyca variant in complex with an o-2 propargyl-beta-tyr-amp analog
58c5h1nB_



not modelled 5.3 11
PDB header:unknown function
Chain: B: PDB Molecule:upf0253 protein yaep;
PDBTitle: crystal structure of sf173 from shigella flexneri
59d1ji8a_



not modelled 5.3 20
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
60c2h3oA_



not modelled 5.3 57
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
61c6mejC_



not modelled 5.2 27
PDB header:immune system
Chain: C: PDB Molecule:e2 glycoprotein;
PDBTitle: broadly neutralizing antibodies against hcv use a cdrh3 disulfide2 motif to recognize an e2 glycoprotein site that can be targeted for3 vaccine design
62c6cg8A_



not modelled 5.2 25
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:upf0335 protein b7z12_12435;
PDBTitle: structure of c. crescentus gapr-dna
63d2v4jc1



not modelled 5.1 18
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
64c6od1B_



not modelled 5.1 16
PDB header:signaling protein
Chain: B: PDB Molecule:anti-adapter protein irad;
PDBTitle: irad-bound to rssb d58p variant

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below