Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1011_(ispE)_1130195_1131115
DateWed Jul 31 22:05:08 BST 2019
Unique Job ID32e98e01c5da133a
SequenceVPTGSVTVRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.740 Y:60.032 Z:49.962
Model (left) based on template c3pygA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol kinase;
PDBTitle: mycobacterium tuberculosis 4-diphosphocytidyl-2-c-methyl-d-erythritol2 kinase (ispe) in complex with adp
Confidence and coverage
Confidence:100.0% Coverage: 97%
298 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pygA_



100.0 100
PDB header:transferase
Chain: A: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol kinase;
PDBTitle: mycobacterium tuberculosis 4-diphosphocytidyl-2-c-methyl-d-erythritol2 kinase (ispe) in complex with adp
2c1uekA_



100.0 35
PDB header:transferase
Chain: A: PDB Molecule:4-(cytidine 5'-diphospho)-2c-methyl-d-erythritol
PDBTitle: crystal structure of 4-(cytidine 5'-diphospho)-2c-methyl-d-2 erythritol kinase
3c2v34B_



100.0 28
PDB header:transferase
Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase;
PDBTitle: ispe in complex with cytidine and ligand
4c1oj4B_



100.0 25
PDB header:transferase
Chain: B: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol
PDBTitle: ternary complex of2 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
5c4rpfA_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase from yersinia pestis nepal516,2 nysgrc target 032715
6c4p52A_



100.0 24
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase from cytophaga hutchinsonii2 atcc 33406, nysgrc target 032717.
7c1fwlD_



100.0 20
PDB header:transferase
Chain: D: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase
8c6cyzA_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: mycobacterial homoserine kinase thrb in complex with amppnp
9c3hulA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes
10c2cz9A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:probable galactokinase;
PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi
11c5watB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:homoserine kinase;
PDBTitle: corynebacterium glutamicum full length homoserine kinase
12c4z7cA_



100.0 17
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: diphosphomevalonate decarboxylase from the sulfolobus solfataricus,2 space group h32
13c4hacA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of the mevalonate kinase from an archaeon2 methanosarcina mazei
14c2hk3A_



100.0 16
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form)
15c2hfuB_



100.0 18
PDB header:transferase
Chain: B: PDB Molecule:mevalonate kinase, putative;
PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate
16c5v2lA_



100.0 16
PDB header:lyase
Chain: A: PDB Molecule:mevalonate diphosphate decarboxylase;
PDBTitle: mevalonate diphosphate mediated atp binding mechanism of the2 mevalonate diphosphate decarboxylase from enterococcus faecalis
17c2x7iA_



100.0 14
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252
18c4ut4B_



100.0 17
PDB header:transferase
Chain: B: PDB Molecule:putative sugar kinase;
PDBTitle: burkholderia pseudomallei heptokinase wcbl, d-mannose complex.
19c1pieA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:galactokinase;
PDBTitle: crystal structure of lactococcus lactis galactokinase2 complexed with galactose
20c2a2cA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:n-acetylgalactosamine kinase;
PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate
21c6n0yB_



not modelled 100.0 17
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: crystal structure of anaerolinea thermophila mevalonate 5-phosphate2 decarboxylase complexed with (r)-mvapp
22c2oi2A_



not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate
23c1wuuA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:galactokinase;
PDBTitle: crystal structure of human galactokinase complexed with2 mgamppnp and galactose
24c2gs8A_



not modelled 100.0 13
PDB header:lyase
Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase;
PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes
25c4n3oB_



not modelled 100.0 17
PDB header:transferase
Chain: B: PDB Molecule:putative d-glycero-d-manno-heptose 7-phosphate kinase;
PDBTitle: 2.4 angstrom resolution crystal structure of putative sugar kinase2 from campylobacter jejuni.
26c1kkhA_



not modelled 100.0 13
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase
27c2aj4B_



not modelled 100.0 17
PDB header:transferase
Chain: B: PDB Molecule:galactokinase;
PDBTitle: crystal structure of saccharomyces cerevisiae galactokinase2 in complex with galactose and mg:amppnp
28c2r42A_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: the biochemical and structural basis for feedback2 inhibition of mevalonate kinase and isoprenoid metabolism
29c3k17A_



not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:lin0012 protein;
PDBTitle: crystal structure of a lin0012 protein from listeria innocua
30c1k47F_



not modelled 100.0 16
PDB header:transferase
Chain: F: PDB Molecule:phosphomevalonate kinase;
PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk)
31c3v2uC_



not modelled 100.0 19
PDB header:transcription
Chain: C: PDB Molecule:protein gal3;
PDBTitle: crystal structure of the yeast gal regulon complex of the repressor,2 gal80p, and the transducer, gal3p, with galactose and atp
32c3k85B_



not modelled 100.0 18
PDB header:transferase
Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase;
PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron
33c5yysC_



not modelled 100.0 17
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis
34d1oj4a1



not modelled 100.0 34
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
35c3ltoB_



not modelled 100.0 12
PDB header:lyase
Chain: B: PDB Molecule:mevalonate diphosphate decarboxylase;
PDBTitle: crystal structure of a mevalonate diphosphate decarboxylase2 from legionella pneumophila
36d1ueka1



not modelled 100.0 43
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
37d1h72c1



not modelled 100.0 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
38c2hkeB_



not modelled 99.9 16
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative;
PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei
39d1kkha1



not modelled 99.9 12
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
40d1piea1



not modelled 99.9 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
41d1wuua1



not modelled 99.9 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
42d1k47a1



not modelled 99.9 15
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
43d1s4ea1



not modelled 99.9 16
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
44d1fi4a1



not modelled 99.9 15
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
45c6n10A_



not modelled 99.9 15
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase mvd1, peroxisomal;
PDBTitle: crystal structure of arabidopsis thaliana mevalonate 5-diphosphate2 decarboxylase 1 complexed with (r)-mvapp
46d1kvka1



not modelled 99.9 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
47d1h72c2



not modelled 99.8 18
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Homoserine kinase
48c1fi4A_



not modelled 99.8 13
PDB header:lyase
Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase;
PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution.
49d1ueka2



not modelled 99.8 23
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
50c4rksB_



not modelled 99.7 12
PDB header:transferase
Chain: B: PDB Molecule:putative uncharacterized protein ta1305;
PDBTitle: crystal structure of mevalonate-3-kinase from thermoplasma acidophilum2 (mevalonate bound)
51c3f0nB_



not modelled 99.7 15
PDB header:lyase
Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase;
PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase
52d1oj4a2



not modelled 99.6 13
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
53d1kvka2



not modelled 99.6 17
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
54d1k47a2



not modelled 99.6 12
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
55d1wuua2



not modelled 99.5 17
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
56d1piea2



not modelled 99.4 17
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
57d1s4ea2



not modelled 99.4 15
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
58d1kkha2



not modelled 99.3 14
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
59d1fi4a2



not modelled 75.0 13
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate 5-diphosphate decarboxylase
60d1wg1a_



not modelled 69.1 9
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
61c5wasB_



not modelled 65.7 19
PDB header:transferase
Chain: B: PDB Molecule:homoserine kinase;
PDBTitle: corynebacterium glutamicum hydrolyzed homoserine kinase
62c5jvoA_



not modelled 32.9 20
PDB header:dna binding protein
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor from the pathogenic2 bacterium corynebacterium pseudotuberculosis
63c4rleA_



not modelled 27.5 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yaaq;
PDBTitle: crystal structure of the c-di-amp binding pii-like protein dara
64d1klpa_



not modelled 23.0 21
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
65c3m05A_



not modelled 20.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pepe_1480;
PDBTitle: the crystal structure of a functionally unknown protein pepe_1480 from2 pediococcus pentosaceus atcc 25745
66c4hhuA_



not modelled 19.9 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:or280;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or280.
67c1k98A_



not modelled 19.7 18
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: adomet complex of meth c-terminal fragment
68c2qnwA_



not modelled 18.8 16
PDB header:signaling protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein
69c4rwwB_



not modelled 17.1 20
PDB header:protein binding
Chain: B: PDB Molecule:lmo2692 protein;
PDBTitle: crystal structure of l. monocytogenes psta in complex with cyclic-di-2 amp
70d1b4ba_



not modelled 15.6 23
Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
71d1a1va2



not modelled 15.4 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
72c4pxhF_



not modelled 15.2 23
PDB header:oxidoreductase/protein binding
Chain: F: PDB Molecule:peptide synthetase;
PDBTitle: structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis in complex with a peptidyl carrier protein domain
73d2p5ma1



not modelled 14.0 14
Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
74c3cagF_



not modelled 13.8 11
PDB header:dna binding protein
Chain: F: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines.
75c2l26A_



not modelled 13.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains
76c3s6eB_



not modelled 12.8 21
PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
77c2n2uA_



not modelled 12.6 14
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or358;
PDBTitle: solution nmr structure of de novo designed ferredoxin fold protein2 sfr3, northeast structural genomics consortium (nesg) target or358
78c3mcqA_



not modelled 12.4 9
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution
79c2zauB_



not modelled 11.7 12
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
80c2cqyA_



not modelled 11.7 18
PDB header:ligase
Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain,
PDBTitle: solution structure of b domain from human propionyl-coa2 carboxylase alpha subunit
81d1xxaa_



not modelled 11.2 10
Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
82d1mlaa2



not modelled 11.0 18
Fold:Ferredoxin-like
Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase
83c2dnwA_



not modelled 10.9 13
PDB header:transport protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna
84c1x3oA_



not modelled 10.9 9
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8
85c2mr7A_



not modelled 10.9 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: apo structure of the peptidyl carrier protein domain 7 of the2 teicoplanin producing non-ribosomal peptide synthetase
86c4wk1A_



not modelled 10.8 9
PDB header:signaling protein
Chain: A: PDB Molecule:psta;
PDBTitle: crystal structure of staphylococcus aureus psta in complex with c-di-2 amp
87c3vr0D_



not modelled 10.8 20
PDB header:protein binding
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pyrococcus furiosus pbab, an archaeal proteasome2 activator
88c1vkrA_



not modelled 10.6 14
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
89d1vkra_



not modelled 10.6 14
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
90c2lolA_



not modelled 10.3 13
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: nmr structure of an acyl-carrier protein from rickettsia prowazekii,2 seattle structural genomics center for infectious disease (ssgcid)
91d7reqb2



not modelled 10.2 34
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
92d1yqga1



not modelled 9.8 26
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
93d1o51a_



not modelled 9.6 15
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:DUF190/COG1993
94c5wtlB_



not modelled 9.6 17
PDB header:membrane protein
Chain: B: PDB Molecule:ompa family protein;
PDBTitle: crystal structure of the periplasmic portion of outer membrane protein2 a (ompa) from capnocytophaga gingivalis
95c4r2nA_



not modelled 8.5 23
PDB header:transferase
Chain: A: PDB Molecule:putative phenylalanine aminotransferase;
PDBTitle: crystal structure of rv3772 in complex with its substrate
96c3wz2C_



not modelled 8.1 20
PDB header:chaperone
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of2 proteasome-assembly chaperone
97c2cq8A_



not modelled 8.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna
98c2m5rA_



not modelled 7.7 15
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of holo-acyl carrier protein of leishmania major
99c2kwlA_



not modelled 7.6 12
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of acyl carrier protein from borrelia burgdorferi

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