Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1014c_(pth)_1133337_1133912
DateWed Jul 31 22:05:08 BST 2019
Unique Job ID5a09030df92dc694
SequenceMAEPLLVVGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.464 Y:47.841 Z:42.244
Model (left) based on template c2mjlA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: solution structure of peptidyl-trna hyrolase from vibrio cholerae
Confidence and coverage
Confidence:100.0% Coverage:100%
191 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mjlA_
100.0 37
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: solution structure of peptidyl-trna hyrolase from vibrio cholerae
2c4dhwA_
100.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from pseudomonas2 aeruginosa with adipic acid at 2.4 angstrom resolution
3d2ptha_
100.0 40
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
4c4fopA_
100.0 39
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from acinetobacter2 baumannii at 1.86 a resolution
5c2z2jA_
100.0 100
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis
6c4q55B_
100.0 31
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, streptococcus pyogenes at 2.19a resolution shows the3 closed structure of the substrate binding cleft
7c3neaA_
100.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis
8c3v2iA_
100.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis
9c4ylyB_
100.0 37
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, staphylococcus aureus at 2.25 angstrom resolution
10d1ryba_
100.0 43
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
11c5zx8A_
100.0 44
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from thermus thermophilus
12d1c8ba_
81.6 25
Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Germination protease
13d1cfza_
67.8 27
Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Hydrogenase maturating endopeptidase HybD
14c2e85B_
67.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
15c5zbyA_
65.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:hydrogenase maturation protease hyci;
PDBTitle: crystal structure of a [nife] hydrogenase maturation protease hyci2 from thermococcus kodakarensis kod1
16c5ijaB_
52.2 24
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase-specific maturation endopeptidase;
PDBTitle: [nife] hydrogenase maturation protease hybd from thermococcus2 kodakarensis
17c5ttxB_
48.5 36
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 2 maturation peptidase;
PDBTitle: crystal structure of hydrogenase 2 maturation peptidase from2 thaumarchaeota archaeon scgc_ab-539-e09
18c2jvaA_
41.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein;
PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211
19d2ea9a1
41.1 17
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
20d2inwa1
38.0 14
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
21d2h28a1
not modelled 36.6 17
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
22c3tgnA_
not modelled 34.9 17
PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
23c2jy9A_
not modelled 33.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative trna hydrolase domain;
PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220
24c3mpoD_
not modelled 28.7 15
PDB header:hydrolase
Chain: D: PDB Molecule:predicted hydrolase of the had superfamily;
PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis
25c6ar6A_
not modelled 28.2 25
PDB header:toxin/protein binding
Chain: A: PDB Molecule:toxin b;
PDBTitle: clostridioides difficile toxinb with dld-4 darpin
26c3ippA_
not modelled 27.2 6
PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje;
PDBTitle: crystal structure of sulfur-free ynje
27c3gygA_
not modelled 26.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb;
PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis
28c6h98A_
not modelled 23.9 6
PDB header:transferase
Chain: A: PDB Molecule:sulfurtransferase;
PDBTitle: native crystal structure of anaerobic ergothioneine biosynthesis2 enzyme from chlorobium limicola.
29c2bb3B_
not modelled 23.7 23
PDB header:transferase
Chain: B: PDB Molecule:cobalamin biosynthesis precorrin-6y methylase (cbie);
PDBTitle: crystal structure of cobalamin biosynthesis precorrin-6y methylase2 (cbie) from archaeoglobus fulgidus
30d2nqra3
not modelled 20.9 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
31c1ujlA_
not modelled 20.8 18
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h
PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker
32c3ktdC_
not modelled 20.5 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution
33c6fc1B_
not modelled 19.9 32
PDB header:translation
Chain: B: PDB Molecule:protein eap1;
PDBTitle: crystal structure of the eif4e-eap1p complex from saccharomyces2 cerevisiae in the cap-bound state
34c5yhxH_
not modelled 19.7 12
PDB header:metal binding protein
Chain: H: PDB Molecule:zinc transport transcriptional regulator;
PDBTitle: structure of lactococcus lactis zitr, wild type
35c1ynmA_
not modelled 19.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:r.hinp1i restriction endonuclease;
PDBTitle: crystal structure of restriction endonuclease hinp1i
36c3hzuA_
not modelled 19.5 27
PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis
37c3bj6B_
not modelled 18.3 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
38d3eeqa2
not modelled 17.6 20
Fold:CbiG N-terminal domain-like
Superfamily:CbiG N-terminal domain-like
Family:CbiG N-terminal domain-like
39c4aq2I_
not modelled 17.0 14
PDB header:oxidoreductase
Chain: I: PDB Molecule:homogentisate 1,2-dioxygenase;
PDBTitle: resting state of homogentisate 1,2-dioxygenase
40c5g2rA_
not modelled 16.3 18
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin biosynthesis protein cnx1;
PDBTitle: crystal structure of the mo-insertase domain cnx1e from2 arabidopsis thaliana
41c3utnX_
not modelled 16.2 19
PDB header:transferase
Chain: X: PDB Molecule:thiosulfate sulfurtransferase tum1;
PDBTitle: crystal structure of tum1 protein from saccharomyces cerevisiae
42c3kp3B_
not modelled 16.0 14
PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
43d1am7a_
not modelled 15.1 17
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Lambda lysozyme
44d2bb3a1
not modelled 14.8 29
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
45c3e8mD_
not modelled 14.6 19
PDB header:transferase
Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase;
PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily
46c5jlsA_
not modelled 14.3 24
PDB header:transcription
Chain: A: PDB Molecule:adhesin competence repressor;
PDBTitle: crystal structure of adhesin competence repressor (adcr) from2 streptococcus pyogenes (c-terminally his tagged)
47c4uz2D_
not modelled 14.0 19
PDB header:hydrolase
Chain: D: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the n-terminal lysm domains from the putative2 nlpc/p60 d,l endopeptidase from t. thermophilus
48c3wz2C_
not modelled 13.7 23
PDB header:chaperone
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of2 proteasome-assembly chaperone
49d1lama2
not modelled 13.7 30
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
50c3n1uA_
not modelled 13.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a;
PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila
51d2bgxa2
not modelled 13.4 27
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
52d1s2oa1
not modelled 13.2 19
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
53c3s2wB_
not modelled 13.1 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
54c3vdoB_
not modelled 13.0 11
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
55d1bofa2
not modelled 12.7 38
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
56c3bpqD_
not modelled 12.6 36
PDB header:toxin
Chain: D: PDB Molecule:toxin rele3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
57c3av6A_
not modelled 12.2 19
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dna methyltransferase 1 with adomet
58c1uarA_
not modelled 11.9 16
PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8
59c3ecoB_
not modelled 11.3 3
PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
60c2jcyA_
not modelled 11.3 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis
61c6alyA_
not modelled 11.1 19
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
62d2al3a1
not modelled 11.0 9
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
63c4ol9A_
not modelled 10.7 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2-dehydropantoate 2-reductase;
PDBTitle: crystal structure of putative 2-dehydropantoate 2-reductase pane from2 mycobacterium tuberculosis complexed with nadp and oxamate
64c2p9jH_
not modelled 10.5 23
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:hypothetical protein aq2171;
PDBTitle: crystal structure of aq2171 from aquifex aeolicus
65c1uz5A_
not modelled 10.3 23
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
66c5t57A_
not modelled 10.3 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:semialdehyde dehydrogenase nad-binding protein;
PDBTitle: crystal structure of a semialdehyde dehydrogenase nad-binding protein2 from cupriavidus necator in complex with calcium and nad
67d2etha1
not modelled 10.2 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
68c2bh7A_
not modelled 9.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms
69d1k47a2
not modelled 9.8 7
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
70c6oq5A_
not modelled 9.8 25
PDB header:toxin
Chain: A: PDB Molecule:toxin b;
PDBTitle: structure of the full-length clostridium difficile toxin b in complex2 with 3 vhhs
71c3mn1B_
not modelled 9.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:probable yrbi family phosphatase;
PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a
72c4r04A_
not modelled 9.4 25
PDB header:transferase
Chain: A: PDB Molecule:toxin a;
PDBTitle: clostridium difficile toxin a (tcda)
73d1s3ja_
not modelled 9.2 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
74c3fzqA_
not modelled 9.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution
75d1k1ea_
not modelled 9.0 23
Fold:HAD-like
Superfamily:HAD-like
Family:Probable phosphatase YrbI
76c1okgA_
not modelled 8.7 14
PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
77c3rfqC_
not modelled 8.6 14
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
78c3k96B_
not modelled 8.6 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii
79c4ztuA_
not modelled 8.5 22
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
80c4fhtA_
not modelled 8.5 23
PDB header:transcription
Chain: A: PDB Molecule:pcav transcriptional regulator;
PDBTitle: crystal structure of the pcav transcriptional regulator from2 streptomyces coelicolor in complex with its natural ligand
81c4navB_
not modelled 8.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein xcc279;
PDBTitle: crystal structure of hypothetical protein xcc2798 from xanthomonas2 campestris, target efi-508608
82c4bolA_
not modelled 8.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:ampdh2;
PDBTitle: crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
83d3broa1
not modelled 8.2 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
84c5cvoA_
not modelled 8.1 23
PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:wd repeat-containing protein 48;
PDBTitle: wdr48:usp46~ubiquitin ternary complex
85c4bndB_
not modelled 8.1 16
PDB header:isomerase
Chain: B: PDB Molecule:alpha-phosphoglucomutase;
PDBTitle: structure of an atypical alpha-phosphoglucomutase similar to2 eukaryotic phosphomannomutases
86c6czlA_
not modelled 8.0 16
PDB header:transferase
Chain: A: PDB Molecule:atp phosphoribosyltransferase catalytic subunit;
PDBTitle: crystal structure of medicago truncatula atp-phosphoribosyltransferase2 in relaxed form
87d1fima_
not modelled 7.9 17
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
88c6jbxB_
not modelled 7.8 13
PDB header:transcription/dna
Chain: B: PDB Molecule:fatty acid biosynthesis transcriptional regulator;
PDBTitle: crystal structure of streptococcus pneumoniae fabt in complex with dna
89c3oopA_
not modelled 7.8 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
90d1kmma1
not modelled 7.7 15
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
91d1wdea_
not modelled 7.6 40
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
92c3ikmD_
not modelled 7.4 22
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
93c3boqB_
not modelled 7.4 10
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
94c2r8zC_
not modelled 7.4 27
PDB header:hydrolase
Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase;
PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion
95c3kbqA_
not modelled 7.4 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
96c3ihtB_
not modelled 7.3 40
PDB header:transferase
Chain: B: PDB Molecule:s-adenosyl-l-methionine methyl transferase;
PDBTitle: crystal structure of s-adenosyl-l-methionine methyl transferase2 (yp_165822.1) from silicibacter pomeroyi dss-3 at 1.80 a resolution
97c2avxA_
not modelled 7.3 14
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: solution structure of e coli sdia1-171
98c2abyA_
not modelled 7.2 22
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein ta0743;
PDBTitle: solution structure of ta0743 from thermoplasma acidophilum
99c2cukC_
not modelled 7.2 35
PDB header:oxidoreductase
Chain: C: PDB Molecule:glycerate dehydrogenase/glyoxylate reductase;
PDBTitle: crystal structure of tt0316 protein from thermus thermophilus hb8

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