Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1016c_(lpqT)_1134789_1135469
DateWed Jul 31 22:05:08 BST 2019
Unique Job ID2df0aef3c2eb99c1
SequenceLAGRRCPQDS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.106 Y:48.712 Z:45.996
Model (left) based on template c6e5fA_
Top template information
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein lpqn;
PDBTitle: crystal structure of lpqn involved in cell envelope biogenesis of2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 73%
166 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6e5fA_
100.0 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein lpqn;
PDBTitle: crystal structure of lpqn involved in cell envelope biogenesis of2 mycobacterium tuberculosis
2c4ol4A_
100.0 34
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
3c3lydA_
100.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans
4d1tu1a_
98.5 13
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
5c2lnjA_
97.1 12
PDB header:photosynthesis
Chain: A: PDB Molecule:putative uncharacterized protein sll1418;
PDBTitle: solution structure of cyanobacterial psbp (cyanop) from synechocystis2 sp. pcc 6803
6c2xb3A_
96.0 10
PDB header:photosynthesis
Chain: A: PDB Molecule:psbp protein;
PDBTitle: the structure of cyanobacterial psbp
7d1v2ba_
89.8 16
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PsbP-like
8c2vu4A_
80.1 17
PDB header:photosynthesis
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 2;
PDBTitle: structure of psbp protein from spinacia oleracea at 1.98 a2 resolution
9c1ymzA_
61.4 25
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
10c6j69A_
59.1 25
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
11c1e0mA_
56.8 33
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
12d2jmfa1
41.6 38
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
13c1yiuA_
38.9 46
PDB header:ligase
Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase;
PDBTitle: itch e3 ubiquitin ligase ww3 domain
14c3n6zA_
33.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:putative immunoglobulin a1 protease;
PDBTitle: crystal structure of a putative immunoglobulin a1 protease2 (bacova_03286) from bacteroides ovatus at 1.30 a resolution
15c2kywA_
32.4 15
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
16c1wr7A_
31.9 27
PDB header:ligase
Chain: A: PDB Molecule:nedd4-2;
PDBTitle: solution structure of the third ww domain of nedd4-2
17c2ysbA_
30.6 25
PDB header:protein binding
Chain: A: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1)
18c3l4hA_
30.3 14
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1;
PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1
19c2lawA_
30.0 31
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
20d1q5fa_
29.5 9
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
21c5ydxA_
not modelled 25.6 17
PDB header:signaling protein
Chain: A: PDB Molecule:ww domain with ppxy motif;
PDBTitle: nmr structure of yap1-2 ww1 domain with lats1 ppxy motif complex
22d1k9ra_
not modelled 25.5 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
23c1wmvA_
not modelled 25.4 21
PDB header:oxidoreductase, apoptosis
Chain: A: PDB Molecule:ww domain containing oxidoreductase;
PDBTitle: solution structure of the second ww domain of wwox
24c1wr4A_
not modelled 25.2 31
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
25c2djyA_
not modelled 22.7 26
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
26d1tk7a1
not modelled 22.7 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
27c2l4jA_
not modelled 21.8 30
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
28c2ysdA_
not modelled 20.6 21
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the first ww domain from the human2 membrane-associated guanylate kinase, ww and pdz domain-3 containing protein 1. magi-1
29d1tk7a2
not modelled 20.4 38
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
30c2dmvA_
not modelled 20.1 31
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
31c2jmfA_
not modelled 20.1 26
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
32c4xz7A_
not modelled 19.7 19
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a tgase
33c2kykA_
not modelled 19.1 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
34d4croa_
not modelled 18.7 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
35d2f21a1
not modelled 18.6 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
36c2dwvB_
not modelled 18.6 17
PDB header:protein binding
Chain: B: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45)
37c2pijB_
not modelled 18.3 54
PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
38c2yshA_
not modelled 17.5 26
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
39d1a4ia1
not modelled 17.3 18
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
40c6j1xB_
not modelled 16.6 26
PDB header:ligase
Chain: B: PDB Molecule:nedd4-like e3 ubiquitin-protein ligase wwp1;
PDBTitle: wwp1 close conformation
41c3ud2C_
not modelled 16.5 36
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin
42c2n8tA_
not modelled 15.4 21
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
43c5ydyA_
not modelled 15.3 24
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
44d1i5hw_
not modelled 15.3 24
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
45c2vdaB_
not modelled 15.0 55
PDB header:protein transport
Chain: B: PDB Molecule:maltoporin;
PDBTitle: solution structure of the seca-signal peptide complex
46d1u2ca1
not modelled 14.9 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Dystroglycan, N-terminal domain
47c2mdwA_
not modelled 14.5 67
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
48d1t1ea2
not modelled 14.1 12
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
49c4rohA_
not modelled 14.1 46
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: crystal structure of tandem ww domains of itch in complex with txnip2 peptide
50d1d1la_
not modelled 14.1 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
51c1ai4B_
not modelled 13.7 15
PDB header:antibiotic resistance
Chain: B: PDB Molecule:penicillin amidohydrolase;
PDBTitle: penicillin acylase complexed with 3,4-dihydroxyphenylacetic acid
52c2ysgA_
not modelled 13.6 16
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
53c2ysfA_
not modelled 13.1 21
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
54d1w8oa1
not modelled 12.8 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
55c4hsrB_
not modelled 12.7 12
PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl-7-aminocephalosporanic acid acylase beta chain;
PDBTitle: crystal structure of a class iii engineered cephalosporin acylase
56c2yscA_
not modelled 12.7 57
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3
57c2ez5W_
not modelled 12.7 21
PDB header:signalling protein,ligase
Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex
58c1t1eA_
not modelled 12.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:kumamolisin;
PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp)
59c6p0qA_
not modelled 12.0 38
PDB header:rna binding protein
Chain: A: PDB Molecule:ribosome biogenesis protein wdr12;
PDBTitle: crystal structure of ubiquitin-like domain of human wdr12
60c2lb0A_
not modelled 12.0 15
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
61c2kq0A_
not modelled 11.9 38
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
62c3edyA_
not modelled 11.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1
63c2zajA_
not modelled 10.9 31
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
64d1b0aa1
not modelled 10.9 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
65d1f8ab1
not modelled 10.7 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
66d1nmva1
not modelled 10.5 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
67d2ho2a1
not modelled 10.4 27
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
68c2lazA_
not modelled 10.3 15
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
69d2itka1
not modelled 9.9 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
70c3ee6A_
not modelled 9.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure analysis of tripeptidyl peptidase -i
71c3k3wB_
not modelled 9.7 12
PDB header:hydrolase
Chain: B: PDB Molecule:penicillin g acylase;
PDBTitle: thermostable penicillin g acylase from alcaligenes faecalis in2 orthorhombic form
72d1m9sa4
not modelled 9.3 9
Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:GW domain
73c5dtcA_
not modelled 9.2 31
PDB header:protein binding
Chain: A: PDB Molecule:ribosome biogenesis protein ytm1;
PDBTitle: ubl structure
74c1cp9B_
not modelled 9.1 10
PDB header:hydrolase
Chain: B: PDB Molecule:penicillin g amidase;
PDBTitle: crystal structure of penicillin g acylase from the bro1 mutant strain2 of providencia rettgeri
75c4fxwB_
not modelled 9.0 50
PDB header:protein binding
Chain: B: PDB Molecule:splicing factor 1;
PDBTitle: structure of phosphorylated sf1 complex with u2af65-uhm domain
76c4yfaC_
not modelled 8.6 27
PDB header:hydrolase
Chain: C: PDB Molecule:protein related to penicillin acylase;
PDBTitle: structure of n-acylhomoserine lactone acylase macq in complex with2 decanoic acid
77c1tk7A_
not modelled 8.6 31
PDB header:signaling protein
Chain: A: PDB Molecule:cg4244-pb;
PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex
78c3nh8A_
not modelled 8.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:aspartoacylase-2;
PDBTitle: crystal structure of murine aminoacylase 3 in complex with n-acetyl-s-2 1,2-dichlorovinyl-l-cysteine
79d1nlta1
not modelled 7.8 9
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
80d1jroa2
not modelled 7.8 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
81d1pina1
not modelled 7.7 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
82c2kxoA_
not modelled 7.7 19
PDB header:cell cycle
Chain: A: PDB Molecule:cell division topological specificity factor;
PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae
83d2gu2a1
not modelled 7.6 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:AstE/AspA-like
84d3orca_
not modelled 7.5 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
85c4a5oB_
not modelled 7.4 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
86d1c3ga1
not modelled 7.3 33
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
87c5xmcA_
not modelled 7.3 36
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy;
PDBTitle: crystal structure of the auto-inhibited nedd4 family e3 ligase itch
88d1a9xa2
not modelled 7.1 13
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
89c1yn9B_
not modelled 7.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:polynucleotide 5'-phosphatase;
PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate
90c1s1hO_
not modelled 7.0 24
PDB header:ribosome
Chain: O: PDB Molecule:40s ribosomal protein s13;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
91c1a4iB_
not modelled 6.9 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
92c4uzmA_
not modelled 6.7 28
PDB header:structural protein
Chain: A: PDB Molecule:putative membrane protein igaa homolog;
PDBTitle: shotgun proteolysis: a practical application
93c6apeA_
not modelled 6.6 27
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional protein fold from helicobacter2 pylori
94c2mdjA_
not modelled 6.6 24
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2;
PDBTitle: solution structure of ww domain with polyproline stretch (pp2ww) of2 hypb
95c2kxqA_
not modelled 6.5 14
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
96c2muyA_
not modelled 6.5 25
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
97c4v1al_
not modelled 6.4 33
PDB header:ribosome
Chain: L: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
98c4b4uB_
not modelled 6.4 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of acinetobacter baumannii n5,2 n10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor
99c5ag8A_
not modelled 6.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:gingipain r2;
PDBTitle: crystal structure of a mutant (665i6h) of the c-terminal2 domain of rgpb

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite