Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1021_(-)_1142675_1143652
DateWed Jul 31 22:05:09 BST 2019
Unique Job IDa514e94c666e40b3
SequenceMIVVLVDPRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.193 Y:60.120 Z:66.788
Model (left) based on template c3crcB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:protein mazg;
PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response
Confidence and coverage
Confidence:100.0% Coverage: 55%
180 residues ( 55% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
270 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3crcB_
100.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:protein mazg;
PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response
2c2yxhB_
100.0 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mazg-related protein;
PDBTitle: crystal structure of mazg-related protein from thermotoga maritima
3c5n0sA_
100.0 14
PDB header:transferase
Chain: A: PDB Molecule:peptide n-methyltransferase;
PDBTitle: crystal structure of opha-deltac6 mutant y98a in complex with sam
4d2a3qa1
99.6 20
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
5c2q4pA_
99.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
6c3obcB_
99.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:pyrophosphatase;
PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution
7d1vmga_
98.9 21
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
8d2oiea1
98.3 20
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
9d2gtad1
98.2 22
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
10d2gtaa1
97.7 22
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
11d1yxba1
97.4 29
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
12d1y6xa1
97.3 35
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
13c1yvwD_
97.1 17
PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
14d1yvwa1
97.1 17
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
15d2a7wa1
96.9 24
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
16c2a7wF_
96.9 24
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7
17c2q9lA_
96.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
18c2p06A_
94.5 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
19d2p06a1
94.5 37
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
20c2yf3F_
92.8 33
PDB header:hydrolase
Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase;
PDBTitle: crystal structure of dr2231, the mazg-like protein from deinococcus2 radiodurans, complex with manganese
21c3nqwB_
not modelled 60.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:cg11900;
PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses
22c3qk9B_
not modelled 33.6 23
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
23d2fxta1
not modelled 33.4 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
24d2cw9a1
not modelled 33.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
25c5h6sB_
not modelled 33.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
26c5jffD_
not modelled 29.8 14
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
27c4uqfB_
not modelled 29.4 8
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
28c3ah5E_
not modelled 25.0 18
PDB header:transferase
Chain: E: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump
29c5b3iB_
not modelled 22.0 13
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c prime;
PDBTitle: homo-dimeric structure of cytochrome c' from thermophilic2 hydrogenophilus thermoluteolus
30d2j4ba1
not modelled 21.9 25
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
31d1e85a_
not modelled 21.3 23
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
32c5lf9A_
not modelled 21.0 8
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 22;
PDBTitle: crystal structure of human nudt22
33c2rfpA_
not modelled 20.7 12
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
34c6hn9A_
not modelled 20.4 30
PDB header:antimicrobial protein
Chain: A: PDB Molecule:nicomicin-1;
PDBTitle: nicomicin-1 -- novel antimicrobial peptides from the arctic polychaeta2 nicomache minor provide new molecular insight into biological role of3 the brichos domain
35d1bpoa1
not modelled 19.7 70
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Clathrin heavy-chain linker domain
36d1cpqa_
not modelled 19.2 15
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
37c5h6tB_
not modelled 19.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
38c2jz8A_
not modelled 17.5 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bh09830;
PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
39c6feyF_
not modelled 17.5 64
PDB header:peptide binding protein
Chain: F: PDB Molecule:probable insulin-like peptide 5;
PDBTitle: crystal structure of drosophila neural ectodermal development factor2 imp-l2 with drosophila dilp5 insulin
40c6feyH_
not modelled 17.2 64
PDB header:peptide binding protein
Chain: H: PDB Molecule:probable insulin-like peptide 5;
PDBTitle: crystal structure of drosophila neural ectodermal development factor2 imp-l2 with drosophila dilp5 insulin
41c3efdK_
not modelled 17.2 22
PDB header:immune system
Chain: K: PDB Molecule:kcsa;
PDBTitle: the crystal structure of the cytoplasmic domain of kcsa
42c2wfuB_
not modelled 16.8 64
PDB header:signaling protein
Chain: B: PDB Molecule:probable insulin-like peptide 5 b chain;
PDBTitle: crystal structure of dilp5 variant db
43c6hqaB_
not modelled 16.6 26
PDB header:transcription
Chain: B: PDB Molecule:subunit (90 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
44c2wfvB_
not modelled 16.6 64
PDB header:signaling protein
Chain: B: PDB Molecule:probable insulin-like peptide 5 b chain;
PDBTitle: crystal structure of dilp5 variant c4
45c1wm9D_
not modelled 16.5 5
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
46d1wura1
not modelled 16.5 5
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
47c6hqaC_
not modelled 16.3 26
PDB header:transcription
Chain: C: PDB Molecule:subunit (90 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
48c4cimP_
not modelled 15.8 31
PDB header:apoptosis
Chain: P: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
49c4cimQ_
not modelled 15.8 31
PDB header:apoptosis
Chain: Q: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
50c5oezA_
not modelled 15.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:fbp protein;
PDBTitle: crystal structure of leishmania major fructose-1,6-bisphosphatase in2 apo form.
51c6mzcG_
not modelled 15.7 28
PDB header:transcription
Chain: G: PDB Molecule:transcription initiation factor tfiid subunit 5;
PDBTitle: human tfiid bc core
52c4b6xB_
not modelled 15.1 29
PDB header:toxin
Chain: B: PDB Molecule:avirulence protein;
PDBTitle: crystal structure of in planta processed avrrps4
53d1ffgb_
not modelled 15.0 56
Fold:Ferredoxin-like
Superfamily:CheY-binding domain of CheA
Family:CheY-binding domain of CheA
54c1a0oH_
not modelled 14.6 56
PDB header:chemotaxis
Chain: H: PDB Molecule:chea;
PDBTitle: chey-binding domain of chea in complex with chey
55c5olaD_
not modelled 14.1 58
PDB header:transcription
Chain: D: PDB Molecule:transcription elongation factor, mitochondrial;
PDBTitle: structure of mitochondrial transcription elongation complex in complex2 with elongation factor tefm
56c4yj6A_
not modelled 13.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:aryl acylamidase;
PDBTitle: the crystal structure of a bacterial aryl acylamidase belonging to the2 amidase signature (as) enzymes family
57c5k4bA_
not modelled 13.3 22
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit d;
PDBTitle: structure of eukaryotic translation initiation factor 3 subunit d2 (eif3d) cap binding domain from nasonia vitripennis, crystal form 1
58c2la2A_
not modelled 13.2 35
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cecropin;
PDBTitle: solution structure of papiliocin isolated from the swallowtail2 butterfly, papilio xuthus
59c2ctoA_
not modelled 12.7 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
60c6a3kA_
not modelled 12.4 20
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of cytochrome c' from shewanella benthica db6705
61c4b6xA_
not modelled 12.3 29
PDB header:toxin
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: crystal structure of in planta processed avrrps4
62d1mt5a_
not modelled 11.7 14
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
63c1bpoA_
not modelled 11.7 70
PDB header:membrane protein
Chain: A: PDB Molecule:protein (clathrin);
PDBTitle: clathrin heavy-chain terminal domain and linker
64d3d1ma1
not modelled 11.6 21
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
65d2ibge1
not modelled 11.5 21
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
66d1oiza1
not modelled 11.5 27
Fold:RuvA C-terminal domain-like
Superfamily:CRAL/TRIO N-terminal domain
Family:CRAL/TRIO N-terminal domain
67c2d1lA_
not modelled 11.3 18
PDB header:protein binding
Chain: A: PDB Molecule:metastasis suppressor protein 1;
PDBTitle: structure of f-actin binding domain imd of mim (missing in metastasis)
68c5lrvA_
not modelled 11.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 7b;
PDBTitle: structure of cezanne/otud7b otu domain bound to lys11-linked2 diubiquitin
69c3m1nB_
not modelled 11.0 21
PDB header:signaling protein
Chain: B: PDB Molecule:sonic hedgehog protein;
PDBTitle: crystal structure of human sonic hedgehog n-terminal domain
70c4ulvB_
not modelled 10.9 15
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c, class ii;
PDBTitle: cytochrome c prime from shewanella frigidimarina
71c3e4xB_
not modelled 10.8 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:apc36150;
PDBTitle: crystal structure of putative metal-dependent hydrolases2 apc36150
72c3muxB_
not modelled 10.6 22
PDB header:lyase
Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a
73c5flmK_
not modelled 10.6 28
PDB header:transcription
Chain: K: PDB Molecule:dna-directed rna polymerase ii subunit rpb11;
PDBTitle: structure of transcribing mammalian rna polymerase ii
74c6c6gA_
not modelled 10.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:biuret hydrolase;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme. inhibitor bound complex.
75c2lfcA_
not modelled 10.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit;
PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j
76d1u5pa2
not modelled 10.0 15
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
77d1ej5a_
not modelled 10.0 7
Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
78c3a2qA_
not modelled 9.8 10
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-cyclic-dimer hydrolase;
PDBTitle: structure of 6-aminohexanoate cyclic dimer hydrolase complexed with2 substrate
79c3m6yA_
not modelled 9.4 17
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution.
80c2pmzL_
not modelled 9.4 10
PDB header:translation, transferase
Chain: L: PDB Molecule:dna-directed rna polymerase subunit l;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
81d1bbha_
not modelled 9.3 13
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
82d2j49a1
not modelled 9.3 14
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
83c2ld7B_
not modelled 9.3 8
PDB header:transcription
Chain: B: PDB Molecule:paired amphipathic helix protein sin3a;
PDBTitle: solution structure of the msin3a pah3-sap30 sid complex
84c4o9lA_
not modelled 9.2 22
PDB header:antiviral protein
Chain: A: PDB Molecule:mitochondrial antiviral signaling protein (mavs);
PDBTitle: crystal structure of horse mavs card domain mutant e26r
85c2vyaB_
not modelled 9.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:fatty-acid amide hydrolase 1;
PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750
86c3kfuE_
not modelled 9.1 15
PDB header:ligase/rna
Chain: E: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the transamidosome
87c2k42A_
not modelled 9.0 10
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
88d2pv7a1
not modelled 9.0 8
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
89d1pswa_
not modelled 9.0 15
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
90d2nxpa1
not modelled 8.9 31
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
91d1zyma1
not modelled 8.5 11
Fold:SAM domain-like
Superfamily:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Family:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
92c3o59X_
not modelled 8.4 22
PDB header:transferase
Chain: X: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: dna polymerase d large subunit dp2(1-300) from pyrococcus horikoshii
93c6mn5A_
not modelled 8.3 24
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
94c4dhxC_
not modelled 8.3 19
PDB header:transport protein/dna binding protein
Chain: C: PDB Molecule:enhancer of yellow 2 transcription factor homolog;
PDBTitle: eny2:ganp complex
95d3bzka2
not modelled 8.3 21
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
96c4c2mK_
not modelled 8.2 17
PDB header:transcription
Chain: K: PDB Molecule:dna-directed rna polymerases i and iii subunit rpac2;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
97c6hqgB_
not modelled 8.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome p450;
PDBTitle: cytochrome p450-153 from phenylobacterium zucineum
98c3fnnA_
not modelled 7.9 24
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase thyx;
PDBTitle: biochemical and structural analysis of an atypical thyx:2 corynebacterium glutamicum nchu 87078 depends on thya for3 thymidine biosynthesis
99d1omha_
not modelled 7.9 16
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain

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