Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1022_(lpqU)_1143740_1144471
DateWed Jul 31 22:05:09 BST 2019
Unique Job IDad3d055db708aeb2
SequenceVSPRRWLRAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.083 Y:37.909 Z:47.731
Model (left) based on template c5anzA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
Confidence and coverage
Confidence:100.0% Coverage: 70%
170 residues ( 70% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5anzA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
2d1qusa_
100.0 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
3c4anrA_
100.0 21
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
4c4oz9A_
99.6 24
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
5c3w6dB_
99.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
6d1qsaa2
99.5 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
7c4cfoB_
99.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
8c2y8pA_
99.5 20
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
9d1gbsa_
99.5 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
10c3gxkB_
99.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
11c6fcqA_
99.4 20
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
12c1slyA_
99.3 19
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
13c3mgwA_
99.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
14c6cfcA_
99.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
15c4xp8A_
97.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
16c4fdyA_
97.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
17c4hpeA_
97.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative cell wall hydrolase tn916-like,ctn1-orf17;
PDBTitle: crystal structure of a putative cell wall hydrolase (cd630_03720) from2 clostridium difficile 630 at 2.38 a resolution
18c3bkhA_
94.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
19c4ow1A_
93.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
20c1xsfA_
90.8 17
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
21d1xsfa1
not modelled 90.7 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
22c5e27B_
not modelled 89.5 19
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
23c4qdnA_
not modelled 86.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:flagellar protein flgj [peptidoglycan hydrolase];
PDBTitle: crystal structure of the endo-beta-n-acetylglucosaminidase from2 thermotoga maritima
24c3eo5A_
not modelled 86.1 18
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
25c2zycA_
not modelled 61.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1
26c3fi7A_
not modelled 59.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:lmo1076 protein;
PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain
27c1zy7A_
not modelled 37.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:rna-specific adenosine deaminase b1, isoform
PDBTitle: crystal structure of the catalytic domain of an adenosine2 deaminase that acts on rna (hadar2) bound to inositol3 hexakisphosphate (ihp)
28c2kngA_
not modelled 30.0 25
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
29c5nm7A_
not modelled 26.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan-binding domain 1;
PDBTitle: crystal structure of burkholderia ap3 phage endolysin
30d1twla_
not modelled 26.5 29
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
31c5dn4A_
not modelled 26.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: structure of the glycoside hydrolase domain from salmonella2 typhimurium flgj
32c5odvB_
not modelled 22.9 11
PDB header:virus
Chain: B: PDB Molecule:coat protein;
PDBTitle: structure of watermelon mosaic virus potyvirus.
33c5wrtB_
not modelled 22.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:soluble inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from toxoplasma2 gondii.
34c3p0dD_
not modelled 20.9 11
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase family 9;
PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum
35c5m2oB_
not modelled 19.5 31
PDB header:protein binding
Chain: B: PDB Molecule:group i dockerin;
PDBTitle: r. flavefaciens' third scab cohesin in complex with a group 1 dockerin
36c5c5vB_
not modelled 17.1 18
PDB header:hydrolase
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: recombinant inorganic pyrophosphatase from t brucei brucei
37c4mfkA_
not modelled 15.9 19
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein tcp24;
PDBTitle: the crystal structure of acyltransferase in complex with decanoyl-coa
38c4uyqB_
not modelled 15.2 7
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: high resolution structure of the third cohesin scac in complex with2 the scab dockerin with a mutation in the c-terminal helix (in to si)3 from acetivibrio cellulolyticus displaying a type i interaction.
39c2auwB_
not modelled 14.2 27
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
40c5wruA_
not modelled 14.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:probable inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from p2 falciparum
41c2ediA_
not modelled 12.7 14
PDB header:ligase
Chain: A: PDB Molecule:nedd8-conjugating enzyme ube2f;
PDBTitle: solution structure of the uq_con domain from human nedd8-2 conjugating enzyme nce2
42c3d63B_
not modelled 12.6 36
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from burkholderia2 pseudomallei
43c3jzaB_
not modelled 12.5 71
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein drra;
PDBTitle: crystal structure of human rab1b in complex with the gef domain of2 drra/sidm from legionella pneumophila
44c3t9aA_
not modelled 12.4 22
PDB header:transferase
Chain: A: PDB Molecule:inositol pyrophosphate kinase;
PDBTitle: crystal structure of the catalytic domain of human diphosphoinositol2 pentakisphosphate kinase 2 (ppip5k2) in complex with amppnp at ph 7.0
45c1ygzC_
not modelled 12.2 36
PDB header:hydrolase
Chain: C: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from helicobacter2 pylori
46c6c45A_
not modelled 12.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of human inorganic pyrophosphatase in the p2121212 space group
47c3iynM_
not modelled 12.0 23
PDB header:virus
Chain: M: PDB Molecule:penton base protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
48c3ld3A_
not modelled 11.6 45
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic phosphatase from anaplasma2 phagocytophilum at 1.75a resolution
49d1bt3a_
not modelled 11.4 14
Fold:Di-copper centre-containing domain
Superfamily:Di-copper centre-containing domain
Family:Catechol oxidase
50c4qlzA_
not modelled 10.2 25
PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:sjchgc07024 protein;
PDBTitle: the structure of inorganic pyrophosphatase from schistosoma japonicum
51c5yanB_
not modelled 9.8 44
PDB header:structural protein
Chain: B: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
52d1fuia1
not modelled 9.4 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:L-fucose isomerase, C-terminal domain
53d1i40a_
not modelled 9.2 36
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
54c3emjL_
not modelled 9.1 36
PDB header:hydrolase
Chain: L: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.2 a crystal structure of inorganic pyrophosphatase from2 rickettsia prowazekii (p21 form)
55c5nrmB_
not modelled 8.9 17
PDB header:cell adhesion
Chain: B: PDB Molecule:doccel5: type i dockerin repeat domain from a.
PDBTitle: crystal structure of the sixth cohesin from acetivibrio2 cellulolyticus' scaffoldin b in complex with cel5 dockerin s51i, l52n3 mutant
56c4lugA_
not modelled 8.3 45
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase ppa1 from arabidopsis2 thaliana
57c3n6oB_
not modelled 8.2 71
PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide exchange factor;
PDBTitle: crystal structure of the gef and p4m domain of drra/sidm from2 legionella pneumophila
58c3lo0A_
not modelled 8.2 45
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis
59c2zuxA_
not modelled 8.2 24
PDB header:lyase
Chain: A: PDB Molecule:yesw protein;
PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose
60d1qeza_
not modelled 8.2 36
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
61c3mx7A_
not modelled 8.0 29
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: crystal structure analysis of human faim-ntd
62c5teaF_
not modelled 8.0 36
PDB header:hydrolase
Chain: F: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of an inorganic pyrophosphatase from neisseria2 gonorrhoeae
63c3tr4C_
not modelled 7.9 27
PDB header:hydrolase
Chain: C: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: structure of an inorganic pyrophosphatase (ppa) from coxiella burnetii
64d1e9ga_
not modelled 7.9 25
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
65d1gk8a1
not modelled 7.9 13
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
66c3k8kB_
not modelled 7.8 22
PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg
67d1wdda1
not modelled 7.8 10
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
68c3fq3H_
not modelled 7.8 27
PDB header:hydrolase
Chain: H: PDB Molecule:inorganic pyrophosphatase:bacterial/archaeal inorganic
PDBTitle: crystal structure of inorganic phosphatase from brucella melitensis
69c6n1cB_
not modelled 7.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from legionella2 pneumophila philadelphia 1
70c1rldB_
not modelled 7.3 9
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose 1,5 bisphosphate carboxylase/oxygenase (large
PDBTitle: solid-state phase transition in the crystal structure of ribulose 1,5-2 biphosphate carboxylase(slash)oxygenase
71d2prda_
not modelled 7.3 36
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
72c3ul4B_
not modelled 7.1 17
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:cellulosome enzyme, dockerin type i;
PDBTitle: crystal structure of coh-olpa(cthe_3080)-doc918(cthe_0918) complex: a2 novel type i cohesin-dockerin complex from clostridium thermocellum3 attc 27405
73d1dvoa_
not modelled 7.0 23
Fold:FinO-like
Superfamily:FinO-like
Family:FinO-like
74c4z12A_
not modelled 6.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:aurone synthase;
PDBTitle: recombinantly expressed latent aurone synthase (polyphenol oxidase)2 co-crystallized with hexatungstotellurate(vi)
75d2cp5a1
not modelled 6.8 26
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
76c4dh2B_
not modelled 6.5 7
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:dockerin type 1;
PDBTitle: crystal structure of coh-olpc(cthe_0452)-doc435(cthe_0435) complex: a2 novel type i cohesin-dockerin complex from clostridium thermocellum3 attc 27405
77c2n9zA_
not modelled 6.1 67
PDB header:toxin
Chain: A: PDB Molecule:tau-theraphotoxin-hs1a;
PDBTitle: solution structure of k1 lobe of double-knot toxin
78d1ohzb_
not modelled 6.0 9
Fold:Type I dockerin domain
Superfamily:Type I dockerin domain
Family:Type I dockerin domain
79c2l23A_
not modelled 6.0 43
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25;
PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein
80c2uxsA_
not modelled 6.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.7a crystal structure of inorganic pyrophosphatase (rv3628)2 from mycobacterium tuberculosis at ph 7.5
81c3lq9B_
not modelled 6.0 16
PDB header:signaling protein
Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein;
PDBTitle: crystal structure of human redd1, a hypoxia-induced regulator of mtor
82c3ca8B_
not modelled 5.9 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydcf;
PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme
83d1ej7l1
not modelled 5.9 9
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
84d1udea_
not modelled 5.9 36
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
85d2cp6a1
not modelled 5.6 26
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
86c2lyiA_
not modelled 5.5 22
PDB header:structural protein
Chain: A: PDB Molecule:protein (entity);
PDBTitle: repetitive domain (rp) of aciniform spidroin 1 from nephila2 antipodiana
87c5lxvB_
not modelled 5.5 23
PDB header:protein binding
Chain: B: PDB Molecule:carbohydrate-binding protein wp_009985128;
PDBTitle: crystal structure of ruminococcus flavefaciens scaffoldin c cohesin in2 complex with a dockerin from an uncharacterized cbm-containing3 protein
88c5jxpA_
not modelled 5.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
89c2y3nB_
not modelled 5.4 23
PDB header:structrual protein/hydrolase
Chain: B: PDB Molecule:cellulosomal family-48 processive glycoside hydrolase;
PDBTitle: type ii cohesin-dockerin domain from bacteroides cellolosolvens
90d1twfa_
not modelled 5.3 13
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
91d2coya1
not modelled 5.3 26
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
92d1jata_
not modelled 5.3 20
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
93c4piaA_
not modelled 5.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin e;
PDBTitle: crystal structure of s. aureus autolysin e
94d1ou8a_
not modelled 5.2 15
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB

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