Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1025_(-)_1146565_1147032
DateWed Jul 31 22:05:09 BST 2019
Unique Job ID405850c9e17402cf
SequenceVVTRQLGRAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.124 Y:27.221 Z:25.468
Model (left) based on template d2gnoa1
Top template information
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
Confidence and coverage
Confidence: 52.8% Coverage: 19%
29 residues ( 19% of your sequence) have been modelled with 52.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gnoa1



52.8 17
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
2c4is4G_



42.0 22
PDB header:ligase
Chain: G: PDB Molecule:glutamine synthetase;
PDBTitle: the glutamine synthetase from the dicotyledonous plant m. truncatula2 is a decamer
3c5z58w_



37.1 31
PDB header:splicing
Chain: W: PDB Molecule:
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
4c6g90T_



35.3 23
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor prp9;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
5c2kz3A_



33.3 17
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
6c3tgnA_



25.8 17
PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
7d1biha2



20.4 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
8d2ouwa1



18.2 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
9c2e5eA_



17.3 32
PDB header:signaling protein
Chain: A: PDB Molecule:advanced glycosylation end product-specific
PDBTitle: solution structure of variable-type domain of human2 receptor for advanced glycation endproducts
10c2r85B_



15.5 26
PDB header:unknown function
Chain: B: PDB Molecule:purp protein pf1517;
PDBTitle: crystal structure of purp from pyrococcus furiosus complexed with amp
11c1vw4L_



15.0 26
PDB header:ribosome
Chain: L: PDB Molecule:54s ribosomal protein l8, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
12c5hsmA_



14.1 15
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv2887;
PDBTitle: crystal structure of mycobacterium tuberculosis marr family protein2 rv2887
13c5b42A_



13.7 50
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
14c4fx0A_



13.3 23
PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional repressor protein;
PDBTitle: crystal structure of m. tuberculosis transcriptional regulator mosr
15c5yhxH_



12.6 10
PDB header:metal binding protein
Chain: H: PDB Molecule:zinc transport transcriptional regulator;
PDBTitle: structure of lactococcus lactis zitr, wild type
16c5iooA_



12.3 32
PDB header:unknown function
Chain: A: PDB Molecule:avpa;
PDBTitle: accommodation of massive sequence variation in nanoarchaeota by the c-2 type lectin fold
17c2wx4C_



11.9 22
PDB header:structural protein
Chain: C: PDB Molecule:decapping protein 1;
PDBTitle: asymmetric trimer of the drosophila melanogaster dcp1 c-2 terminal domain
18c2nplX_



11.6 14
PDB header:cell adhesion
Chain: X: PDB Molecule:coxsackievirus and adenovirus receptor;
PDBTitle: nmr structure of card d2 domain
19c2odaB_



11.6 24
PDB header:protein binding
Chain: B: PDB Molecule:hypothetical protein pspto_2114;
PDBTitle: crystal structure of pspto_2114
20c5oa30_



10.3 30
PDB header:translation
Chain: 0: PDB Molecule:eukaryotic translation initiation factor 2d;
PDBTitle: human 40s-eif2d-re-initiation complex
21d1biha3



not modelled 10.0 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
22c4l22A_



not modelled 9.5 12
PDB header:transferase
Chain: A: PDB Molecule:phosphorylase;
PDBTitle: crystal structure of putative glycogen phosphorylase from2 streptococcus mutans
23c3qajL_



not modelled 9.3 22
PDB header:ligase
Chain: L: PDB Molecule:glutamine synthetase;
PDBTitle: x-ray crystal structure of glutamine synthetase from bacillus subtilis2 cocrystallized with atp
24c5xr2D_



not modelled 9.2 21
PDB header:chaperone
Chain: D: PDB Molecule:protein/nucleic acid deglycase hcha;
PDBTitle: sav0551
25c2d3aJ_



not modelled 9.1 26
PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate
26c3kp3B_



not modelled 9.1 4
PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
27c2l4aA_



not modelled 9.0 22
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
28c3kblA_



not modelled 9.0 21
PDB header:protein binding
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution
29c1q7hA_



not modelled 8.7 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum
30c5u07B_



not modelled 8.7 20
PDB header:immune system
Chain: B: PDB Molecule:cse2;
PDBTitle: crispr rna-guided surveillance complex
31d2q79a1



not modelled 8.6 44
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
32c3kkaD_



not modelled 8.6 14
PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
33d1a7ge_



not modelled 8.3 44
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
34d2bopa_



not modelled 8.2 44
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
35d1civa2



not modelled 8.2 12
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
36c2mpeA_



not modelled 8.1 19
PDB header:unknown function
Chain: A: PDB Molecule:bpsl1050;
PDBTitle: solution nmr structure for b. pseudomallei bpsl1050
37d1wwca_



not modelled 8.0 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
38c1zs7A_



not modelled 8.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0525;
PDBTitle: the structure of gene product ape0525 from aeropyrum pernix
39d1f9fa_



not modelled 7.9 44
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
40c3beyC_



not modelled 7.8 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
41c3ddsB_



not modelled 7.7 9
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
42c6m8sM_



not modelled 7.6 29
PDB header:signaling protein
Chain: M: PDB Molecule:btb/poz domain-containing protein kctd12;
PDBTitle: crystal structure of the kctd12 h1 domain in complex with gbeta1gamma22 subunits
43d1zxqa1



not modelled 7.5 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
44c3boqB_



not modelled 7.4 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
45d1dbda_



not modelled 7.3 44
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
46d1he7a_



not modelled 7.2 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
47d1r8ha_



not modelled 7.2 33
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
48c3j6vI_



not modelled 7.1 21
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
49d1ku2a1



not modelled 7.0 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
50c4yifE_



not modelled 6.8 11
PDB header:dna binding protein
Chain: E: PDB Molecule:marr family protein rv0880;
PDBTitle: crystal structure of rv0880
51d2fbka1



not modelled 6.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
52c4blgB_



not modelled 6.6 39
PDB header:viral protein
Chain: B: PDB Molecule:latency-associated nuclear antigen;
PDBTitle: crystal structure of mhv-68 latency-associated nuclear antigen (lana)2 c-terminal dna binding domain
53c3g12A_



not modelled 6.6 10
PDB header:lyase
Chain: A: PDB Molecule:putative lactoylglutathione lyase;
PDBTitle: crystal structure of a putative lactoylglutathione lyase from2 bdellovibrio bacteriovorus
54d2atia1



not modelled 6.6 9
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
55c4zhbA_



not modelled 6.6 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ankyrin repeat-containing protein;
PDBTitle: n-terminal structure of ankyrin repeat-containing protein lega11 from2 legionella pneumophila
56d1l5wa_



not modelled 6.5 15
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
57d1vk3a1



not modelled 6.5 42
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
58c4hedA_



not modelled 6.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: zebrafish chemokine cxl1
59c3o4oC_



not modelled 6.4 21
PDB header:immune system
Chain: C: PDB Molecule:interleukin-1 receptor type 2;
PDBTitle: crystal structure of an interleukin-1 receptor complex
60c4zyaA_



not modelled 6.3 33
PDB header:ligase
Chain: A: PDB Molecule:asparagine--trna ligase, cytoplasmic;
PDBTitle: the n-terminal extension domain of human asparaginyl-trna synthetase
61c4hblA_



not modelled 6.3 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of abfr of staphylococcus epidermidis
62d2nxyb2



not modelled 6.3 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
63c4b8xB_



not modelled 6.2 26
PDB header:transcription
Chain: B: PDB Molecule:possible marr-transcriptional regulator;
PDBTitle: near atomic resolution crystal structure of sco5413, a marr family2 transcriptional regulator from streptomyces coelicolor
64d1iray1



not modelled 6.2 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
65c2lsmA_



not modelled 6.2 33
PDB header:chaperone
Chain: A: PDB Molecule:dna-packaging protein fi;
PDBTitle: solution structure of gpfi c-terminal domain
66d1t3ta1



not modelled 6.1 40
Fold:RuvA C-terminal domain-like
Superfamily:FGAM synthase PurL, linker domain
Family:FGAM synthase PurL, linker domain
67c4lqqB_



not modelled 6.1 22
PDB header:transferase/transferase activator
Chain: B: PDB Molecule:cbk1 kinase activator protein mob2;
PDBTitle: crystal structure of the cbk1(t743e)-mob2 kinase-coactivator complex2 in crystal form b
68d2ctxa_



not modelled 6.1 35
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
69d1tnna_



not modelled 6.0 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
70c2konA_



not modelled 6.0 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of cv_2116 from chromobacterium2 violaceum. northeast structural genomics consortium target3 cvt4(1-82)
71d2frha1



not modelled 5.9 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
72c5zc2B_



not modelled 5.8 13
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
73d1zyma1



not modelled 5.7 21
Fold:SAM domain-like
Superfamily:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Family:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
74c1ag7A_



not modelled 5.5 35
PDB header:neurotoxin
Chain: A: PDB Molecule:conotoxin gs;
PDBTitle: conotoxin gs, nmr, 20 structures
75d1ag7a_



not modelled 5.5 35
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
76c2nziA_



not modelled 5.4 14
PDB header:transferase
Chain: A: PDB Molecule:titin;
PDBTitle: crystal structure of domains a168-a170 from titin
77c3hiuB_



not modelled 5.4 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of protein (xcc3681) from xanthomonas2 campestris pv. campestris str. atcc 33913
78d3deua1



not modelled 5.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
79c5aiqD_



not modelled 5.2 29
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of ligand-free nadr
80c3of6D_



not modelled 5.1 86
PDB header:immune system
Chain: D: PDB Molecule:pre t-cell antigen receptor alpha;
PDBTitle: human pre-t cell receptor crystal structure
81d2fxaa1



not modelled 5.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
82c3q3uA_



not modelled 5.1 71
PDB header:oxidoreductase
Chain: A: PDB Molecule:lignin peroxidase;
PDBTitle: trametes cervina lignin peroxidase
83c2akfC_



not modelled 5.1 31
PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
84c2akfA_



not modelled 5.1 31
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
85d2cfxa1



not modelled 5.1 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
86c3mtrA_



not modelled 5.0 17
PDB header:cell adhesion
Chain: A: PDB Molecule:neural cell adhesion molecule 1;
PDBTitle: crystal structure of the ig5-fn1 tandem of human ncam
87c5z08D_



not modelled 5.0 27
PDB header:cell cycle
Chain: D: PDB Molecule:cenp-h;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex

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