Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1028A_(kdpF)_1151924_1152016
DateWed Jul 31 22:05:10 BST 2019
Unique Job IDe362ec5d61c40d1b
SequenceMTTVDNIVGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:9.854 Y:21.790 Z:22.655
Model (left) based on template c6fosI_
Top template information
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: cyanidioschyzon merolae photosystem i
Confidence and coverage
Confidence: 55.2% Coverage: 57%
17 residues ( 57% of your sequence) have been modelled with 55.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fosI_



55.2 53
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: cyanidioschyzon merolae photosystem i
2c5zgbI_



43.8 53
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
3c6igzI_



42.8 47
PDB header:plant protein
Chain: I: PDB Molecule:psai;
PDBTitle: structure of psi-lhci
4c5zghI_



41.7 53
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
5c4rkuI_



23.8 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i at 3 angstrom resolution
6c6b87C_



20.9 37
PDB header:membrane protein
Chain: C: PDB Molecule:tmhc2_e;
PDBTitle: crystal structure of transmembrane protein tmhc2_e
7c6ijoI_



18.9 47
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: photosystem i of chlamydomonas reinhardtii
8c4y28I_



18.9 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of plant photosystem i super-complex at 2.8 angstrom2 resolution.
9c6jo5I_



18.1 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
10c4xk8i_



15.9 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
11c3j2wH_



15.8 46
PDB header:virus
Chain: H: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
12c3j2wE_



15.8 46
PDB header:virus
Chain: E: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
13c4xk8I_



15.8 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
14c5zjiI_



15.8 47
PDB header:membrane protein
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
15c5l8rI_



15.7 47
PDB header:oxidoreductase
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of plant photosystem i super-complex at 2.6 angstrom2 resolution.
16c6ithA_



13.4 36
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
17c4pdyA_



9.9 29
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside phosphotransferase;
PDBTitle: crystal structure of aminoglycoside phosphotransferase from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
18c2jo1A_



8.4 42
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
19c5jjnB_



7.4 43
PDB header:signaling protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: structure of the srii/htrii(g83f) complex in p212121 space group ("v"2 shape)
20c5jjnD_



7.4 43
PDB header:signaling protein
Chain: D: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: structure of the srii/htrii(g83f) complex in p212121 space group ("v"2 shape)
21c2o01I_



not modelled 7.3 47
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
22c2mkvA_



not modelled 7.3 26
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
23d1ehkb2



not modelled 7.2 56
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
24c2jp3A_



not modelled 6.9 26
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
25c3ebnD_



not modelled 6.3 36
PDB header:hydrolase
Chain: D: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below