Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1029_(kdpA)_1152016_1153731
DateWed Jul 31 22:05:10 BST 2019
Unique Job IDb66d383cd14f6211
SequenceMSGTSWLQFA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:76.391 Y:57.141 Z:73.745
Model (left) based on template c5mrwA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase potassium-binding subunit;
PDBTitle: structure of the kdpfabc complex
Confidence and coverage
Confidence:100.0% Coverage: 98%
557 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5mrwA_
100.0 51
PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase potassium-binding subunit;
PDBTitle: structure of the kdpfabc complex
2c4j7cK_
100.0 15
PDB header:transport protein
Chain: K: PDB Molecule:ktr system potassium uptake protein b;
PDBTitle: ktrab potassium transporter from bacillus subtilis
3c3pjzB_
99.7 17
PDB header:transport protein
Chain: B: PDB Molecule:potassium uptake protein trkh;
PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus
4c3pjzA_
99.5 17
PDB header:transport protein
Chain: A: PDB Molecule:potassium uptake protein trkh;
PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus
5c6o7ua_
52.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
6c2ndjA_
39.1 35
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
7c4ev6E_
27.9 24
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
8d1wmxa_
24.8 38
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
9c6o7xa_
22.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
10d1wmxb_
21.6 43
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
11c5nhuI_
16.0 71
PDB header:hydrolase
Chain: I: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
12c6cfwF_
15.6 25
PDB header:membrane protein
Chain: F: PDB Molecule:monovalent cation/h+ antiporter subunit b;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
13c3ogiC_
15.5 60
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative esat-6-like protein 6;
PDBTitle: crystal structure of the mycobacterium tuberculosis h37rv esxop2 complex (rv2346c-rv2347c)
14c4gzrA_
15.2 60
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein 6;
PDBTitle: crystal structure of the mycobacterium tuberculosis h37rv esxop2 (rv2346c-rv2347c) complex in space group c2221
15c2k21A_
15.1 27
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
16c3j47O_
14.2 60
PDB header:protein binding
Chain: O: PDB Molecule:26s proteasome regulatory subunit rpn9;
PDBTitle: formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
17c5nhuJ_
12.7 71
PDB header:hydrolase
Chain: J: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
18c5n9yB_
12.5 20
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
19d1oe8a1
11.9 13
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
20d1gu3a_
11.5 8
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:CBM4/9
21c5yf4A_
not modelled 11.3 21
PDB header:protein binding
Chain: A: PDB Molecule:mob-like protein phocein;
PDBTitle: a kinase complex mst4-mob4
22c5halA_
not modelled 11.2 36
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative beta-lactamase from burkholderia2 vietnamiensis
23c1ot0A_
not modelled 11.0 25
PDB header:antibiotic
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: structure of antimicrobial peptide, hp (2-20) and its2 analogues derived from helicobacter pylori, as determined3 by 1h nmr spectroscopy
24c1p0jA_
not modelled 11.0 25
PDB header:ribosome
Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1;
PDBTitle: hp (2-20) substitution asp to trp modification in sds-d252 micelles
25c5wylB_
not modelled 11.0 40
PDB header:ribosomal protein/nuclear protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
26c2kk2A_
not modelled 10.9 38
PDB header:signaling protein
Chain: A: PDB Molecule:en-a1;
PDBTitle: nmr solution structure of the pheromone en-a1 from euplotes nobilii
27d1d02a_
not modelled 10.7 57
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease MunI
28c5twvG_
not modelled 10.7 15
PDB header:transport protein
Chain: G: PDB Molecule:atp-sensitive inward rectifier potassium channel 11;
PDBTitle: cryo-em structure of the pancreatic atp-sensitive k+ channel2 sur1/kir6.2 in the presence of atp and glibenclamide
29c5wylD_
not modelled 10.6 40
PDB header:ribosomal protein/nuclear protein
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
30c2v52M_
not modelled 10.3 38
PDB header:structural protein/contractile protein
Chain: M: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel2 complexed to g-actin
31c2levA_
not modelled 10.2 53
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ler;
PDBTitle: structure of the dna complex of the c-terminal domain of ler
32c1zcdA_
not modelled 10.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa
33c3lw5K_
not modelled 9.6 31
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x psak;
PDBTitle: improved model of plant photosystem i
34c2bpqB_
not modelled 9.5 25
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
35d1kz1a_
not modelled 9.5 18
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
36c2m0qA_
not modelled 9.5 15
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
37d1hnra_
not modelled 9.4 41
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
38c5xyvC_
not modelled 9.4 26
PDB header:protein binding
Chain: C: PDB Molecule:protein deadlock;
PDBTitle: crystal structure of drosophila melanogaster rhino chromoshadow domain2 in complex with deadlock n-terminal domain
39c4p22A_
not modelled 9.2 31
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme 1;
PDBTitle: crystal structure of n-terminal fragments of e1
40c2wscK_
not modelled 9.0 38
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit psak, chloroplastic;
PDBTitle: improved model of plant photosystem i
41c5zghJ_
not modelled 8.9 32
PDB header:photosynthesis
Chain: J: PDB Molecule:psaj;
PDBTitle: cryo-em structure of the red algal psi-lhcr
42c3nrlB_
not modelled 8.6 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein rumgna_01417;
PDBTitle: crystal structure of protein rumgna_01417 from ruminococcus gnavus,2 northeast structural genomics consortium target ugr76
43d1gvha3
not modelled 8.6 24
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
44d1nvmb1
not modelled 8.5 32
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
45d1yova1
not modelled 8.3 38
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
46d1d4oa_
not modelled 8.1 67
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
47c1pt9B_
not modelled 8.1 67
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
48d1jb0j_
not modelled 8.0 21
Fold:Single transmembrane helix
Superfamily:Subunit IX of photosystem I reaction centre, PsaJ
Family:Subunit IX of photosystem I reaction centre, PsaJ
49c2ks1A_
not modelled 8.0 17
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
50c2jwaA_
not modelled 8.0 17
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
51d2cnda2
not modelled 7.9 10
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
52c3cmmA_
not modelled 7.9 23
PDB header:ligase/protein binding
Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 1;
PDBTitle: crystal structure of the uba1-ubiquitin complex
53d1pnoa_
not modelled 7.8 44
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
54c6igzK_
not modelled 7.8 36
PDB header:plant protein
Chain: K: PDB Molecule:psak;
PDBTitle: structure of psi-lhci
55c6dc6A_
not modelled 7.8 31
PDB header:signaling protein/ligase
Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme 1;
PDBTitle: crystal structure of human ubiquitin activating enzyme e1 (uba1) in2 complex with ubiquitin
56c4ky0B_
not modelled 7.7 18
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
57c2o01J_
not modelled 7.5 32
PDB header:photosynthesis
Chain: J: PDB Molecule:photosystem i reaction center subunit ix;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
58c5xtrC_
not modelled 7.4 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:fad-linked sulfhydryl oxidase;
PDBTitle: crystal structure of baculoviral sulfhydryl oxidase p33 (r127a, e183a2 mutant)
59c3j9pD_
not modelled 7.3 27
PDB header:transport protein
Chain: D: PDB Molecule:maltose-binding periplasmic protein, transient receptor
PDBTitle: structure of the trpa1 ion channel determined by electron cryo-2 microscopy
60c6rdi8_
not modelled 7.2 42
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1a,2 monomer-masked refinement
61c6rdr8_
not modelled 7.2 42
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1d,2 monomer-masked refinement
62c2bruC_
not modelled 7.1 56
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
63c4gtnA_
not modelled 7.1 18
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
64d1g3wa2
not modelled 7.1 19
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
65c5h5pA_
not modelled 7.0 22
PDB header:transcription
Chain: A: PDB Molecule:myelin regulatory factor;
PDBTitle: crystal structure of myelin-gene regulatory factor dna binding domain
66c4ii3A_
not modelled 7.0 23
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 1;
PDBTitle: crystal structure of s. pombe ubiquitin activating enzyme 1 (uba1) in2 complex with ubiquitin and atp/mg
67c2yf3F_
not modelled 6.9 33
PDB header:hydrolase
Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase;
PDBTitle: crystal structure of dr2231, the mazg-like protein from deinococcus2 radiodurans, complex with manganese
68c2yn9B_
not modelled 6.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: cryo-em structure of gastric h+,k+-atpase with bound rubidium
69d2h8pc1
not modelled 6.6 30
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
70c6ijjK_
not modelled 6.4 17
PDB header:membrane protein
Chain: K: PDB Molecule:psak;
PDBTitle: photosystem i of chlamydomonas reinhardtii
71c3dxeB_
not modelled 6.3 43
PDB header:protein binding
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: crystal structure of the intracellular domain of human app (t668a2 mutant) in complex with fe65-ptb2
72d1tvca2
not modelled 6.2 20
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
73d2piaa2
not modelled 6.2 15
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
74c5mqfT_
not modelled 6.2 19
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor cwc22 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
75c6ijoG_
not modelled 6.1 33
PDB header:photosynthesis
Chain: G: PDB Molecule:psag;
PDBTitle: photosystem i of chlamydomonas reinhardtii
76c3qnqD_
not modelled 6.0 15
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
77d2c7na1
not modelled 6.0 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:A20-like zinc finger
78d1usha1
not modelled 5.7 17
Fold:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Superfamily:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Family:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
79d2isya2
not modelled 5.7 21
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
80c2zxeB_
not modelled 5.7 17
PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:na+,k+-atpase beta subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
81c1nvmB_
not modelled 5.7 32
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
82c2epgB_
not modelled 5.6 40
PDB header:ligase
Chain: B: PDB Molecule:hypothetical protein ttha1785;
PDBTitle: crystal structure of ttha1785
83d1qfja2
not modelled 5.6 4
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
84c4ainB_
not modelled 5.6 16
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
85c2lsjA_
not modelled 5.5 25
PDB header:protein binding/protein binding
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: solution structure of the mouse rev1 ctd in complex with the rev1-2 interacting region (rir)of pol kappa
86c5z47A_
not modelled 5.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of pyrrolidone carboxylate peptidase i with2 disordered loop a from deinococcus radiodurans r1
87c2ot8D_
not modelled 5.5 33
PDB header:transport protein
Chain: D: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
88c4nkpD_
not modelled 5.4 18
PDB header:chaperone
Chain: D: PDB Molecule:putative extracellular heme-binding protein;
PDBTitle: crystal structure of a putative extracellular heme-binding protein2 (despig_02683) from desulfovibrio piger atcc 29098 at 1.24 a3 resolution
89d1fdra2
not modelled 5.3 4
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
90c4uecB_
not modelled 5.3 36
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4g, isoform a;
PDBTitle: complex of d. melanogaster eif4e with eif4g and cap analog
91d1x7fa1
not modelled 5.3 40
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Outer surface protein, C-terminal domain
92c3mk7F_
not modelled 5.2 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
93c2c7mA_
not modelled 5.2 30
PDB header:protein binding
Chain: A: PDB Molecule:rab guanine nucleotide exchange factor 1;
PDBTitle: human rabex-5 residues 1-74 in complex with ubiquitin
94d1krha2
not modelled 5.2 12
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below