Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1031_(kdpC)_1155857_1156426
DateWed Jul 31 22:05:10 BST 2019
Unique Job IDc68f9fc010f74f44
SequenceMRRQLLPALT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.852 Y:52.285 Z:63.772
Model (left) based on template c5mrwG_
Top template information
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
Confidence and coverage
Confidence:100.0% Coverage: 97%
184 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5mrwG_



100.0 46
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
2c4oxqB_



73.5 17
PDB header:metal binding protein
Chain: B: PDB Molecule:manganese abc transporter, periplasmic-binding protein
PDBTitle: structure of staphylococcus pseudintermedius metal-binding protein2 sita in complex with zinc
3c4k3vA_



58.7 15
PDB header:transport protein
Chain: A: PDB Molecule:abc superfamily atp binding cassette transporter, binding
PDBTitle: structure of staphylococcus aureus mntc
4d1hq1a_



55.4 25
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
5d1dula_



54.5 23
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
6d1qb2a_



53.3 33
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
7c4aktB_



53.1 22
PDB header:hydrolase/peptide
Chain: B: PDB Molecule:thiazoline oxidase/subtilisin-like protease;
PDBTitle: patg macrocyclase in complex with peptide
8c4ue4C_



51.8 27
PDB header:translation
Chain: C: PDB Molecule:signal recognition particle protein;
PDBTitle: structural basis for targeting and elongation arrest of bacillus2 signal recognition particle
9c2jqeA_



51.4 21
PDB header:signaling protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: soution structure of af54 m-domain
10c4xcoC_



50.0 12
PDB header:rna binding protein
Chain: C: PDB Molecule:signal recognition particle 54 kda protein,signal sequence;
PDBTitle: signal-sequence induced conformational changes in the signal2 recognition particle
11d2ffha2



49.1 27
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
12c3ipwA_



47.0 11
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase tatd family protein;
PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica
13d1qzxa2



46.2 23
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
14c3e2vA_



43.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:3'-5'-exonuclease;
PDBTitle: crystal structure of an uncharacterized amidohydrolase from2 saccharomyces cerevisiae
15c3rcmA_



43.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:tatd family hydrolase;
PDBTitle: crystal structure of efi target 500140:tatd family hydrolase from2 pseudomonas putida
16c3gg7A_



41.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized metalloprotein;
PDBTitle: crystal structure of an uncharacterized metalloprotein from2 deinococcus radiodurans
17d1xwya1



35.6 9
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
18d1j6oa_



35.4 13
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
19d1zzma1



28.3 7
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
20c2y1hA_



26.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3;
PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3)
21c3qllB_



not modelled 25.0 18
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of ripc from yersinia pestis
22c4cl2A_



not modelled 23.4 29
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic solute binding protein;
PDBTitle: structure of periplasmic metal binding protein from candidatus2 liberibacter asiaticus
23c1toaA_



not modelled 23.2 17
PDB header:binding protein
Chain: A: PDB Molecule:protein (periplasmic binding protein troa);
PDBTitle: periplasmic zinc binding protein troa from treponema pallidum
24d1toaa_



not modelled 23.2 17
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
25c2xioA_



not modelled 22.7 6
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1;
PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a
26c4ysnD_



not modelled 22.5 41
PDB header:isomerase
Chain: D: PDB Molecule:putative 4-aminobutyrate aminotransferase;
PDBTitle: structure of aminoacid racemase in complex with plp
27d2ijob1



not modelled 21.6 33
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
28c3e90B_



not modelled 21.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:ns3 protease;
PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h
29c2ps3A_



not modelled 21.0 17
PDB header:metal transport
Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: structure and metal binding properties of znua, a periplasmic zinc2 transporter from escherichia coli
30d1befa_



not modelled 19.9 28
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
31c2ordA_



not modelled 19.8 19
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
32c3lkwA_



not modelled 19.8 28
PDB header:viral protein,hydrolase
Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and
PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active site2 mutant
33c2j37W_



not modelled 19.2 33
PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein (srp54);
PDBTitle: model of mammalian srp bound to 80s rncs
34c3mfqB_



not modelled 19.1 19
PDB header:metal binding protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center
35c5nlaA_



not modelled 18.8 20
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator transcription regulator
PDBTitle: crystal structure of the arac-like transcriptional activator cuxr
36d2phcb1



not modelled 18.6 21
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
37c4bjqB_



not modelled 18.6 23
PDB header:transferase
Chain: B: PDB Molecule:penicillin binding protein transpeptidase domain protein;
PDBTitle: crystal structure of e. coli penicillin binding protein 3,2 domain v88-s165
38d2fomb1



not modelled 18.5 28
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
39c2v3cC_



not modelled 18.4 13
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
40c5lc0B_



not modelled 18.3 28
PDB header:hydrolase
Chain: B: PDB Molecule:ns2b-ns3 protease,ns2b-ns3 protease;
PDBTitle: crystal structure of zika virus ns2b-ns3 protease in complex with a2 boronate inhibitor
41c4m9mA_



not modelled 18.2 28
PDB header:viral protein
Chain: A: PDB Molecule:ns2b-ns3 protease;
PDBTitle: ns2b-ns3 protease from dengue virus at ph 8.5
42d1vkoa1



not modelled 18.2 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
43c2gzxB_



not modelled 18.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative tatd related dnase;
PDBTitle: crystal structure of the tatd deoxyribonuclease mw0446 from2 staphylococcus aureus. northeast structural genomics consortium3 target zr237.
44c1gw4A_



not modelled 17.6 22
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
45c2yolA_



not modelled 17.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease subunit ns2b, serine protease ns3;
PDBTitle: west nile virus ns2b-ns3 protease in complex with 3,4-2 dichlorophenylacetyl-lys-lys-gcma
46c3dxvA_



not modelled 17.0 30
PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
47c3dm5A_



not modelled 16.7 21
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
48c5gafi_



not modelled 16.6 23
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: rnc in complex with srp
49c2iy3A_



not modelled 16.5 21
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein,signal recognition
PDBTitle: structure of the e. coli signal regognition particle
50c6arbA_



not modelled 15.2 23
PDB header:lyase
Chain: A: PDB Molecule:citrate lyase subunit beta-like protein;
PDBTitle: crystal structure of protein cite from mycobacterium tuberculosis in2 complex with magnesium, pyruvate and coenzyme a
51c4xrvB_



not modelled 15.1 36
PDB header:metal binding protein
Chain: B: PDB Molecule:periplasmic solute binding protein;
PDBTitle: structure of a zn abc transporter substrate binding protein from2 paracoccus denitrificans
52c3zxxA_



not modelled 14.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:subtilisin-like protein;
PDBTitle: structure of self-cleaved protease domain of pata
53c1qzwC_



not modelled 14.6 23
PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
54c2j289_



not modelled 14.5 23
PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
55c2zp2B_



not modelled 14.5 17
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
56c5oqmk_



not modelled 14.3 14
PDB header:transcription
Chain: K: PDB Molecule:dna-directed rna polymerase ii subunit rpb11;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
57c1vkoA_



not modelled 14.2 24
PDB header:isomerase
Chain: A: PDB Molecule:inositol-3-phosphate synthase;
PDBTitle: crystal structure of inositol-3-phosphate synthase (ce21227) from2 caenorhabditis elegans at 2.30 a resolution
58c1x3wB_



not modelled 14.1 5
PDB header:hydrolase
Chain: B: PDB Molecule:uv excision repair protein rad23;
PDBTitle: structure of a peptide:n-glycanase-rad23 complex
59d1yixa1



not modelled 14.1 16
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
60c5x3tA_



not modelled 14.1 33
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
61d2fp7b1



not modelled 14.0 23
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
62c6n39A_



not modelled 13.9 12
PDB header:transferase
Chain: A: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of an dephospho-coa kinase coae from mycobacterium2 paratuberculosis
63d2pv4a1



not modelled 13.9 32
Fold:Sama2622-like
Superfamily:Sama2622-like
Family:Sama2622-like
64c2pb2B_



not modelled 13.8 22
PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
65c4aksA_



not modelled 13.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:thiazoline oxidase/subtilisin-like protease;
PDBTitle: patg macrocyclase domain
66c5vxsF_



not modelled 13.2 21
PDB header:lyase
Chain: F: PDB Molecule:citrate lyase subunit beta-like protein, mitochondrial;
PDBTitle: crystal structure analysis of human clybl in apo form
67c3hjtB_



not modelled 13.1 25
PDB header:cell adhesion, transport protein
Chain: B: PDB Molecule:lmb;
PDBTitle: structure of laminin binding protein (lmb) of streptococcus agalactiae2 a bifunctional protein with adhesin and metal transporting activity
68d1ohwa_



not modelled 13.0 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
69c4cdiC_



not modelled 13.0 21
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
70d1oqya3



not modelled 12.9 23
Fold:XPC-binding domain
Superfamily:XPC-binding domain
Family:XPC-binding domain
71c2fvmA_



not modelled 12.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:dihydropyrimidinase;
PDBTitle: crystal structure of dihydropyrimidinase from saccharomyces kluyveri2 in complex with the reaction product n-carbamyl-beta-alanine
72c2ma3A_



not modelled 12.5 29
PDB header:replication
Chain: A: PDB Molecule:dna replication initiator (cdc21/cdc54);
PDBTitle: nmr solution structure of the c-terminus of the minichromosome2 maintenance protein mcm from methanothermobacter thermautotrophicus
73c4v1ag_



not modelled 12.4 23
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
74c6gcsf_



not modelled 11.3 23
PDB header:oxidoreductase
Chain: F: PDB Molecule:nufm subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
75c5n9jB_



not modelled 11.3 13
PDB header:transcription
Chain: B: PDB Molecule:mediator of rna polymerase ii transcription subunit 10;
PDBTitle: core mediator of transcriptional regulation
76d2r6gf1



not modelled 11.1 21
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
77c1wnfA_



not modelled 11.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii
78c2ykyB_



not modelled 11.0 22
PDB header:transferase
Chain: B: PDB Molecule:beta-transaminase;
PDBTitle: structural determinants of the beta-selectivity of a bacterial2 aminotransferase
79d1e5pa_



not modelled 10.6 14
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
80d1afwa2



not modelled 10.6 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
81c3thgA_



not modelled 10.6 13
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
82c1p1hD_



not modelled 10.5 15
PDB header:isomerase
Chain: D: PDB Molecule:inositol-3-phosphate synthase;
PDBTitle: crystal structure of the 1l-myo-inositol/nad+ complex
83c3vs9F_



not modelled 9.9 17
PDB header:transferase
Chain: F: PDB Molecule:type iii polyketide synthase;
PDBTitle: crystal structure of type iii pks arsc mutant
84d1d8ca_



not modelled 9.9 24
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
85c4oddB_



not modelled 9.9 7
PDB header:allergen
Chain: B: PDB Molecule:lipocalin allergen;
PDBTitle: crystal structure of a dog lipocalin allergen
86c3beyC_



not modelled 9.8 8
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
87c2k9sA_



not modelled 9.7 23
PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac
88c5mmjw_



not modelled 9.6 57
PDB header:ribosome
Chain: W: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
89c1u5vA_



not modelled 9.6 23
PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp form2 mycobacterium tuberculosis
90d1gnsa_



not modelled 9.5 21
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
91c2as9B_



not modelled 9.5 9
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease;
PDBTitle: functional and structural characterization of spl proteases from2 staphylococcus aureus
92d1tw3a1



not modelled 9.4 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
93c2ee7A_



not modelled 9.3 14
PDB header:structural protein
Chain: A: PDB Molecule:sperm flagellar protein 1;
PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1
94c2ov3A_



not modelled 9.3 33
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc type zinc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc bound
95d1rp3a1



not modelled 9.2 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
96c3c19A_



not modelled 9.2 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
97c2mxbA_



not modelled 9.2 50
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: structure of the transmembrane domain of the mouse erythropoietin2 receptor
98c5xtdo_



not modelled 9.1 23
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
99c2huoA_



not modelled 9.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:inositol oxygenase;
PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate

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Transmembrane helix prediction 

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