Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1035c_(-)_1159379_1160065
DateWed Jul 31 22:05:11 BST 2019
Unique Job ID6cc9d0ad1a1cf11a
SequenceVPHPTTLMKL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.565 Y:18.533 Z:19.518
Model (left) based on template c3iwfA_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
Confidence and coverage
Confidence: 26.1% Coverage: 8%
19 residues ( 8% of your sequence) have been modelled with 26.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3iwfA_



26.1 16
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
2c4furD_



15.0 50
PDB header:hydrolase
Chain: D: PDB Molecule:urease subunit gamma 2;
PDBTitle: crystal structure of urease subunit gamma 2 from brucella melitensis2 biovar abortus 2308
3c4zmmB_



14.8 21
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: ggdef domain of dcsbis complexed with c-di-gmp
4c2fvhB_



14.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:urease gamma subunit;
PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis
5d1e9ya2



14.3 17
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
6d4ubpa_



14.1 17
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
7c4z42A_



12.4 42
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit gamma;
PDBTitle: crystal structure of urease from yersinia enterocolitica
8d1ejxa_



10.0 25
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
9c3wz4F_



9.6 13
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
10c2mxfA_



9.6 21
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:mvat;
PDBTitle: structure of the dna complex of the c-terminal domain of mvat
11c3qgaD_



9.6 8
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
12c1e9zA_



9.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
13c4ntqB_



8.4 22
PDB header:toxin
Chain: B: PDB Molecule:ecl cdii;
PDBTitle: cdia-ct/cdii toxin and immunity complex from enterobacter cloacae
14c5cnlA_



8.4 11
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
15d1t9ba1



7.9 8
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
16c1p9cA_



5.7 11
PDB header:ligand binding protein
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: nmr solution structure of the c-terminal ubiquitin-2 interacting motif of the proteasome subunit s5a
17c2zihC_



5.5 17
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 74;
PDBTitle: crystal structure of yeast vps74
18c3wz3A_



5.5 15
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
19d3ebya1



5.4 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
20c2ziiA_



5.3 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 74;
PDBTitle: crystal structure of yeast vps74-n-term truncation variant
21c3hefB_



not modelled 5.3 30
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite