Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1036c_(-)_1160099_1160437
DateWed Jul 31 22:05:11 BST 2019
Unique Job ID689491783f90c686
SequenceLIPGRMVLNW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.946 Y:21.933 Z:44.031
Model (left) based on template c5kinD_
Top template information
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
Confidence and coverage
Confidence: 38.5% Coverage: 36%
40 residues ( 36% of your sequence) have been modelled with 38.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5kinD_



38.5 20
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
2d1prtd_



33.1 46
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
3c6bxtB_



29.2 58
PDB header:membrane protein
Chain: B: PDB Molecule:mitochondrial association factor 1;
PDBTitle: crystal structure of toxoplasma gondii mitochondrial association2 factor 1 a (maf1a) in complex with adpribose
4c5tchH_



28.6 20
PDB header:lyase
Chain: H: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
5c1x1qA_



27.8 28
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8
6d1qopb_



24.0 25
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
7c4hjdB_



22.1 53
PDB header:unknown function
Chain: B: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
8c4hjdA_



22.1 53
PDB header:unknown function
Chain: A: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
9c4ywcA_



13.8 36
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription factor myc3;
PDBTitle: crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
10c2krxA_



13.7 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
11c5mlpA_



12.8 20
PDB header:ligase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of cdps from rickettsiella grylli
12c3w20B_



10.5 58
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a novel n-substituted l-amino acid dioxygenase2 from burkholderia ambifaria ammd
13d1v8za1



9.1 23
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
14c3pfyA_



8.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 5;
PDBTitle: the catalytic domain of human otud5
15c2lnmA_



8.0 23
PDB header:protein transport
Chain: A: PDB Molecule:protein tic 40, chloroplastic;
PDBTitle: solution structure of the c-terminal np-repeat domain of tic40, a co-2 chaperone during protein import into chloroplasts
16d1ho8a_



7.9 19
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Regulatory subunit H of the V-type ATPase
17d1igwa_



7.7 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
18c5cuzA_



6.9 40
PDB header:chaperone
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type d protein,
PDBTitle: crystal structure of semet-substituted n-terminal truncated human b12-2 chaperone cbld (108-296)
19d1uura1



6.4 46
Fold:STAT-like
Superfamily:STAT
Family:STAT
20d1r5aa1



6.2 13
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
21d1kp0a1



not modelled 6.1 43
Fold:Ribonuclease H-like motif
Superfamily:Creatinase/prolidase N-terminal domain
Family:Creatinase/prolidase N-terminal domain
22c3domC_



not modelled 6.0 45
PDB header:transcription
Chain: C: PDB Molecule:rna polymerase ii transcription factor b subunit 2;
PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2
23c4bopA_



not modelled 6.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 1;
PDBTitle: structure of otud1 otu domain
24c4ykbE_



not modelled 5.7 17
PDB header:plant protein
Chain: E: PDB Molecule:tetrapyrrole-binding protein;
PDBTitle: structure of gun4 from chlamydomonas reinhardtii
25d1axda1



not modelled 5.7 26
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
26c2lw1A_



not modelled 5.5 27
PDB header:dna binding protein
Chain: A: PDB Molecule:abc transporter atp-binding protein uup;
PDBTitle: the c-terminal domain of the uup protein is a dna-binding coiled coil2 motif
27c2i6hA_



not modelled 5.5 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0120;
PDBTitle: structure of protein of unknown function atu0120 from agrobacterium2 tumefaciens
28d2i6ha1



not modelled 5.5 40
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Atu0120-like
29c3c0rC_



not modelled 5.4 16
PDB header:cell cycle, hydrolase
Chain: C: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin
30c2yg8B_



not modelled 5.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from2 deinococcus radiodurans
31c3a98B_



not modelled 5.3 58
PDB header:signaling protein
Chain: B: PDB Molecule:engulfment and cell motility protein 1;
PDBTitle: crystal structure of the complex of the interacting regions of dock22 and elmo1
32c5jzeA_



not modelled 5.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: erve virus viral otu domain protease in complex with mouse isg15
33c6n1fD_



not modelled 5.2 50
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, 2og-fe(ii) oxygenase family;
PDBTitle: crystal structure of oxidoreductase, 2og-fe(ii) oxygenase family, from2 burkholderia pseudomallei
34d1v2aa1



not modelled 5.1 10
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain

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