Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1042c_(-)_1165096_1165503
DateWed Jul 31 22:05:11 BST 2019
Unique Job IDa83c593c46985520
SequenceVTRVGVISDE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.337 Y:28.048 Z:23.928
Model (left) based on template c2l4aA_
Top template information
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
Confidence and coverage
Confidence: 67.3% Coverage: 30%
41 residues ( 30% of your sequence) have been modelled with 67.3% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2l4aA_
67.3 22
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
2d2cg4a1
61.2 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
3d1i1ga1
56.8 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
4c4czdA_
56.8 23
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
5d2coba1
56.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
6d2cyya1
53.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
7c6paxA_
53.5 19
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
8d2cfxa1
51.9 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
9c2ia0A_
45.9 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
10c2dbbA_
43.9 15
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
11c2cg4B_
42.6 27
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
12c2p6tH_
42.5 14
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
13d1p6ra_
42.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
14c1u78A_
41.2 3
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
15c4ch7A_
39.6 21
PDB header:transcription
Chain: A: PDB Molecule:nird-like protein;
PDBTitle: crystal structure of the siroheme decarboxylase nirdl
16c2e7xA_
38.8 19
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
17d1pdnc_
38.8 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
18c1i1gA_
37.4 27
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
19c4pcqC_
36.4 27
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
20d2ezha_
35.7 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
21c2vbzA_
not modelled 35.7 19
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
22c3r1fO_
not modelled 34.7 15
PDB header:transcription
Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis
23c2m8eA_
not modelled 33.4 16
PDB header:dna binding protein
Chain: A: PDB Molecule:sleeping beauty transposase;
PDBTitle: nmr structure of the pai subdomain of sleeping beauty transposase
24d2g7la1
not modelled 32.7 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
25c4czdD_
not modelled 30.8 26
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
26d1k78a1
not modelled 28.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
27c2hwkA_
not modelled 27.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:helicase nsp2;
PDBTitle: crystal structure of venezuelan equine encephalitis alphavirus nsp22 protease domain
28c2e1cA_
not modelled 26.4 17
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
29d2ezia_
not modelled 25.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
30c2gqqB_
not modelled 24.6 19
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
31c3g7rB_
not modelled 23.8 13
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional regulator2 from streptomyces coelicolor
32c2yxhB_
not modelled 23.1 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mazg-related protein;
PDBTitle: crystal structure of mazg-related protein from thermotoga maritima
33c4e5vA_
not modelled 22.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thua-like protein;
PDBTitle: crystal structure of a putative thua-like protein (parmer_02418) from2 parabacteroides merdae atcc 43184 at 1.75 a resolution
34c2jg6A_
not modelled 22.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna-3-methyladenine glycosidase;
PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i from2 staphylococcus aureus
35c2p73A_
not modelled 21.8 37
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (mannosyltransferase) involved
PDBTitle: crystal structure of a glycosyltransferase involved in the2 glycosylation of the major capsid of pbcv-1
36c2g7gA_
not modelled 21.4 15
PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
37c6j05B_
not modelled 20.9 16
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
38c3trkA_
not modelled 20.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
39c4pdyA_
not modelled 19.3 24
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside phosphotransferase;
PDBTitle: crystal structure of aminoglycoside phosphotransferase from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
40d1nkua_
not modelled 18.2 19
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase I (Tag)
41c2a5wC_
not modelled 18.0 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma
PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus
42d1ijwc_
not modelled 17.3 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
43d1hcra_
not modelled 16.8 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
44d2v4jc1
not modelled 15.8 23
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
45d1ji8a_
not modelled 15.3 31
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
46c2cfxD_
not modelled 15.0 16
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
47c3hefB_
not modelled 15.0 11
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
48d1okra_
not modelled 14.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
49d1pbya1
not modelled 14.5 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
50c2zb9A_
not modelled 14.5 13
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
51d1sd4a_
not modelled 13.7 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
52c1yx3A_
not modelled 13.6 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
53c2g7lA_
not modelled 12.2 11
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
54d1musa_
not modelled 10.9 8
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Transposase inhibitor (Tn5 transposase)
55c2npiD_
not modelled 10.7 40
PDB header:transcription
Chain: D: PDB Molecule:protein pcf11;
PDBTitle: clp1-atp-pcf11 complex
56d2id3a1
not modelled 10.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
57c5ojyA_
not modelled 10.1 10
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: co-complex structure of regulator protein 2 (pamr2) with pamamycin 6072 from streptomyces alboniger
58d1stza1
not modelled 9.7 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
59c2npiC_
not modelled 9.6 40
PDB header:transcription
Chain: C: PDB Molecule:protein pcf11;
PDBTitle: clp1-atp-pcf11 complex
60c1bjzA_
not modelled 9.5 14
PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
61c2l0kA_
not modelled 9.4 26
PDB header:transcription
Chain: A: PDB Molecule:stage iii sporulation protein d;
PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna
62c3e66B_
not modelled 9.3 38
PDB header:splicing
Chain: B: PDB Molecule:prp8;
PDBTitle: crystal structure of the beta-finger domain of yeast prp8
63c2uutA_
not modelled 9.3 10
PDB header:hydrolase
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: the 2.4 angstrom resolution structure of the d346g mutant of the2 sapporo virus rdrp polymerase
64c4oi4B_
not modelled 9.0 40
PDB header:transcription
Chain: B: PDB Molecule:protein pcf11;
PDBTitle: protein complex of clp1 bound to atp and mg2+ with2 pcf11deltan454deltac563 of s. cerevisiae
65c4c0bC_
not modelled 8.9 40
PDB header:transcription
Chain: C: PDB Molecule:pcf11p;
PDBTitle: structure of wild-type clp1p-pcf11p (454 -563) complex
66d2g7ga1
not modelled 8.5 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
67c4c0hD_
not modelled 8.5 40
PDB header:transcription
Chain: D: PDB Molecule:pcf11p;
PDBTitle: extended interface between pcf11p and clp1p and structural basis for2 atp loss in gly135arg point mutant
68c3bjbE_
not modelled 8.3 13
PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
69c1apfA_
not modelled 8.2 46
PDB header:cardiac stimulant
Chain: A: PDB Molecule:anthopleurin-b;
PDBTitle: anthopleurin-b, nmr, 20 structures
70d1z0xa1
not modelled 8.0 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
71c2g7sA_
not modelled 7.9 12
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
72c6o4mA_
not modelled 7.6 23
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: racemic melittin
73c3i4pA_
not modelled 7.3 22
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
74c2mw6A_
not modelled 7.3 23
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: structure of the bee venom toxin melittin with [(c5h5)ru]+ fragment2 attached to the tryptophan residue
75c4oi4D_
not modelled 7.3 57
PDB header:transcription
Chain: D: PDB Molecule:protein pcf11;
PDBTitle: protein complex of clp1 bound to atp and mg2+ with2 pcf11deltan454deltac563 of s. cerevisiae
76d2np5a1
not modelled 7.2 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
77d2fd5a1
not modelled 7.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
78c4cgrA_
not modelled 7.1 13
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of regulator protein sco3201 from streptomyces coelicolor
79c4fcyA_
not modelled 6.9 9
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
80d2vkea1
not modelled 6.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
81c2raeA_
not modelled 6.7 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
82d2jn6a1
not modelled 6.6 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
83c2mltA_
not modelled 6.6 23
PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
84c1mbjA_
not modelled 6.5 14
PDB header:dna binding protein
Chain: A: PDB Molecule:myb proto-oncogene protein;
PDBTitle: mouse c-myb dna-binding domain repeat 3
85d1mbja_
not modelled 6.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
86d1z84a2
not modelled 6.4 11
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
87c3bqyA_
not modelled 6.4 7
PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).
88c4c0hC_
not modelled 6.3 57
PDB header:transcription
Chain: C: PDB Molecule:pcf11p;
PDBTitle: extended interface between pcf11p and clp1p and structural basis for2 atp loss in gly135arg point mutant
89c2oerA_
not modelled 6.2 4
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: probable transcriptional regulator from pseudomonas aeruginosa
90c6o4mB_
not modelled 6.2 23
PDB header:toxin
Chain: B: PDB Molecule:melittin;
PDBTitle: racemic melittin
91c2mltB_
not modelled 6.2 23
PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
92d1jhfa1
not modelled 6.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
93c2yvhA_
not modelled 6.0 9
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
94c4omzG_
not modelled 5.9 8
PDB header:transcription
Chain: G: PDB Molecule:nolr;
PDBTitle: crystal structure of nolr from sinorhizobium fredii
95d2g9wa1
not modelled 5.7 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
96d1r1ua_
not modelled 5.6 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
97c2qkoA_
not modelled 5.4 17
PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
98c4bqqB_
not modelled 5.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: protein crystal structure of the n-terminal and recombinase domains of2 the streptomyces temperate phage serine recombinase, fc31 integrase.
99c4guaB_
not modelled 5.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd

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