Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1045_(-)_1167677_1168558
DateWed Jul 31 22:05:12 BST 2019
Unique Job IDf2d50067e274ae9f
SequenceVTKPYSSPPT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.855 Y:50.033 Z:64.102
Model (left) based on template c4ok0B_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
Confidence and coverage
Confidence:100.0% Coverage: 73%
214 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ok0B_



100.0 17
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
2c5uvdA_



98.9 17
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
3c4wqkA_



98.2 16
PDB header:transferase
Chain: A: PDB Molecule:2''-aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside nucleotidylyltransferase ant(2")-2 ia, apo form
4c4e8iA_



98.1 11
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
5c1vfgB_



85.3 19
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
6d1vfga2



69.4 18
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
7c3h37B_



51.2 22
PDB header:transferase
Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein;
PDBTitle: the structure of cca-adding enzyme apo form i
8c3wfrE_



48.8 18
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
9c4x4wB_



44.4 20
PDB header:rna binding protein
Chain: B: PDB Molecule:cca trna nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of the full-length human mitochondrial cca-adding2 enzyme
10c3wfpA_



41.5 11
PDB header:transferase
Chain: A: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
11d1qb2a_



41.0 25
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
12d1dula_



38.4 17
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
13c3wfsD_



37.8 11
PDB header:transferase/rna
Chain: D: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
14c2jqeA_



36.9 13
PDB header:signaling protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: soution structure of af54 m-domain
15c3wfrG_



34.9 11
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
16c3wfqG_



34.8 18
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
17d1hq1a_



34.3 16
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
18c4ue4C_



32.2 17
PDB header:translation
Chain: C: PDB Molecule:signal recognition particle protein;
PDBTitle: structural basis for targeting and elongation arrest of bacillus2 signal recognition particle
19d2ffha2



30.5 17
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
20d1qzxa2



30.2 17
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
21c3wfrH_



not modelled 29.0 11
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
22c4xcoC_



not modelled 24.8 13
PDB header:rna binding protein
Chain: C: PDB Molecule:signal recognition particle 54 kda protein,signal sequence;
PDBTitle: signal-sequence induced conformational changes in the signal2 recognition particle
23c3c66B_



not modelled 21.6 12
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
24c5oetB_



not modelled 19.3 9
PDB header:ligase
Chain: B: PDB Molecule:glutathione synthetase-like effector 30 (gpa-gss30-apo);
PDBTitle: the structure of a glutathione synthetase like-effector (gss30) from2 globodera pallida in apoform.
25c3wfsC_



not modelled 19.0 18
PDB header:transferase/rna
Chain: C: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
26c3h4rA_



not modelled 18.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
27d1miwa2



not modelled 17.7 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
28c3wfqE_



not modelled 17.5 17
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
29c3wfqH_



not modelled 16.3 17
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
30c2jpfA_



not modelled 16.2 24
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: bpp3783_115-220
31c3wfrF_



not modelled 15.7 18
PDB header:transferase/rna
Chain: F: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
32d1ou5a2



not modelled 13.8 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
33d2ay0a1



not modelled 13.7 18
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
34c2khrA_



not modelled 13.7 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein mbth;
PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis
35d1mnta_



not modelled 11.4 29
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
36c5ja1B_



not modelled 9.3 10
PDB header:ligase
Chain: B: PDB Molecule:enterobactin biosynthesis protein ybdz;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 mbth-like protein ybdz
37c5wmmB_



not modelled 8.8 18
PDB header:biosynthetic protein
Chain: B: PDB Molecule:mbth homologue;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
38d2gpfa1



not modelled 8.5 15
Fold:MbtH/L9 domain-like
Superfamily:MbtH-like
Family:MbtH-like
39c2rbfB_



not modelled 8.0 16
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
40c3qoqC_



not modelled 7.9 18
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
41c5gafi_



not modelled 7.8 17
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: rnc in complex with srp
42d4ubpc1



not modelled 7.8 30
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:alpha-Subunit of urease
43d2pstx1



not modelled 7.6 13
Fold:MbtH/L9 domain-like
Superfamily:MbtH-like
Family:MbtH-like
44c1u9pA_



not modelled 7.4 29
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
45c2j37W_



not modelled 7.3 25
PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein (srp54);
PDBTitle: model of mammalian srp bound to 80s rncs
46d1bu2a1



not modelled 7.1 9
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
47d1yt3a2



not modelled 6.7 13
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
48c6q52A_



not modelled 6.4 19
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
49d1qmha2



not modelled 6.4 24
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:RNA 3'-terminal phosphate cyclase, RPTC
50d1lvaa3



not modelled 6.4 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
51c2np3A_



not modelled 6.1 10
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family regulator;
PDBTitle: crystal structure of tetr-family regulator (sco0857) from streptomyces2 coelicolor a3.
52c5u89B_



not modelled 6.0 23
PDB header:hydrolase/inhibitor
Chain: B: PDB Molecule:mbth domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
53d1g3nc1



not modelled 5.9 9
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
54c2lpdA_



not modelled 5.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a mbth-like protein from burkholderia2 pseudomallei, the etiological agent responsible for melioidosis,3 seattle structural genomics center for infectious disease target4 bupsa.13472.b

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