Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1053c_(-)_1176016_1176291
DateWed Jul 31 22:05:12 BST 2019
Unique Job IDba42284defdf1977
SequenceMDSHKVCMNN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.065 Y:45.451 Z:32.959
Model (left) based on template c3a69A_
Top template information
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook protein flge;
PDBTitle: atomic model of the bacterial flagellar hook based on2 docking an x-ray derived structure and terminal two alpha-3 helices into an 7.1 angstrom resolution cryoem map
Confidence and coverage
Confidence: 46.1% Coverage: 49%
45 residues ( 49% of your sequence) have been modelled with 46.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3a69A_



46.1 24
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook protein flge;
PDBTitle: atomic model of the bacterial flagellar hook based on2 docking an x-ray derived structure and terminal two alpha-3 helices into an 7.1 angstrom resolution cryoem map
2c5jxlA_



33.8 32
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook protein flge;
PDBTitle: cryo-em structure of the flagellar hook of campylobacter jejuni
3c3m9pA_



22.8 28
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:male-specific lethal 3 homolog;
PDBTitle: human msl3 chromodomain bound to dna and h4k20me1 peptide
4c3m9qA_



20.6 22
PDB header:dna binding protein
Chain: A: PDB Molecule:protein male-specific lethal-3;
PDBTitle: drosophila msl3 chromodomain
5c3t9wA_



17.4 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:small laccase, multi-copper oxidase;
PDBTitle: small laccase from amycolatopsis sp. atcc 39116
6c4i2yB_



16.9 22
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
7c3e19D_



15.9 21
PDB header:transcription regulator, metal binding p
Chain: D: PDB Molecule:feoa;
PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group
8c5lhxA_



13.3 22
PDB header:structural protein
Chain: A: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: pb3 domain of drosophila melanogaster plk4 (sak)
9c4ifdK_



13.2 38
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
10c1zctB_



12.5 11
PDB header:transferase
Chain: B: PDB Molecule:glycogenin-1;
PDBTitle: structure of glycogenin truncated at residue 270 in a complex with udp
11c4bkwA_



11.7 36
PDB header:receptor
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 9;
PDBTitle: crystal structure of the c-terminal region of human zfyve9
12c3cxjB_



10.8 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus
13c2lxwA_



10.7 47
PDB header:apoptosis
Chain: A: PDB Molecule:xiap-associated factor 1;
PDBTitle: the solution structure of xiap(ring)-binding domain of human xaf1
14c5wrhA_



10.1 37
PDB header:motor protein
Chain: A: PDB Molecule:flagellar basal-body rod protein flgg;
PDBTitle: flgg structure based on the cryoem map of the bacterial flagellar2 polyrod
15c2qziA_



10.1 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311.
16c4xvnC_



9.8 64
PDB header:viral protein
Chain: C: PDB Molecule:small terminase;
PDBTitle: crystal structure of the small terminase from thermophilic phage g20c
17c2kgsA_



9.7 32
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: solution structure of the amino-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis
18d1ll2a_



9.4 11
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycogenin
19d1x6ma_



9.3 20
Fold:Mss4-like
Superfamily:Mss4-like
Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
20c3hieA_



8.5 34
PDB header:exocytosis
Chain: A: PDB Molecule:exocyst complex component sec3;
PDBTitle: structure of the membrane-binding domain of the sec3 subunit2 of the exocyst complex
21c3tztB_



not modelled 8.0 21
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.
22c1zcyA_



not modelled 7.1 11
PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser
23c4uegB_



not modelled 6.8 17
PDB header:transferase
Chain: B: PDB Molecule:glycogenin-2;
PDBTitle: crystal structure of human glycogenin-2 catalytic domain
24d1kwia_



not modelled 6.8 36
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
25c3kzwD_



not modelled 6.5 31
PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
26c3h8gC_



not modelled 6.0 29
PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
27d1c3pa_



not modelled 5.8 28
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Histone deacetylase, HDAC
28d1e3ha5



not modelled 5.8 48
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
29c1gytG_



not modelled 5.6 43
PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
30c2wshC_



not modelled 5.5 15
PDB header:hydrolase
Chain: C: PDB Molecule:endonuclease ii;
PDBTitle: structure of bacteriophage t4 endoii e118a mutant
31d1c55a_



not modelled 5.2 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
32c3jruB_



not modelled 5.1 37
PDB header:hydrolase
Chain: B: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
33c5wxkB_



not modelled 5.1 12
PDB header:transferase
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: earp bound with domain i of ef-p
34c4ksiA_



not modelled 5.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:leucine aminopeptidase 1, chloroplastic;
PDBTitle: crystal structure analysis of the acidic leucine aminopeptidase of2 tomato
35c3u0kA_



not modelled 5.0 20
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp

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