Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1054_(-)_1176933_1177247
DateWed Jul 31 22:05:13 BST 2019
Unique Job ID6fba87eb50d374e0
SequenceVTGKGIVEST ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.404 Y:34.644 Z:45.634
Model (left) based on template c3nkhB_
Top template information
PDB header:recombination
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
Confidence and coverage
Confidence: 99.2% Coverage: 91%
95 residues ( 91% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3nkhB_



99.2 19
PDB header:recombination
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
2c1z1bA_



99.1 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
3c5dcfA_



99.1 19
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerd,dna translocase ftsk;
PDBTitle: c-terminal domain of xerd recombinase in complex with gamma domain of2 ftsk
4c5jjvA_



99.1 18
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerh;
PDBTitle: crystal structure of xerh site-specific recombinase bound to2 palindromic difh substrate: post-cleavage complex
5c2a3vA_



98.8 15
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase inti4;
PDBTitle: structural basis for broad dna-specificity in integron recombination
6c6en2A_



98.6 17
PDB header:recombination
Chain: A: PDB Molecule:int protein;
PDBTitle: structure of the tn1549 transposon integrase (aa 82-397, r225k) in2 complex with a circular intermediate dna (ci6b-dna)
7c5vfzA_



98.5 18
PDB header:dna binding protein
Chain: A: PDB Molecule:gp33;
PDBTitle: integrase from mycobacterium phage brujita
8d1p7da_



98.4 13
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
9c1ma7A_



98.3 9
PDB header:hydrolase, ligase/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
10c5hxyE_



98.2 19
PDB header:recombination
Chain: E: PDB Molecule:tyrosine recombinase xera;
PDBTitle: crystal structure of xera recombinase
11c1crxA_



98.0 11
PDB header:replication/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: cre recombinase/dna complex reaction intermediate i
12d1aiha_



98.0 19
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
13d1ae9a_



97.8 13
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
14d5crxb2



97.7 11
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
15c4a8eA_



97.6 19
PDB header:cell cycle
Chain: A: PDB Molecule:probable tyrosine recombinase xerc-like;
PDBTitle: the structure of a dimeric xer recombinase from archaea
16c5c6kB_



97.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: bacteriophage p2 integrase catalytic domain
17c1a0pA_



97.2 19
PDB header:dna recombination
Chain: A: PDB Molecule:site-specific recombinase xerd;
PDBTitle: site-specific recombinase, xerd
18d1a0pa2



96.6 19
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
19d1f44a2



95.9 9
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
20c3uxuA_



95.4 13
PDB header:recombination
Chain: A: PDB Molecule:probable integrase;
PDBTitle: the structure of the catalytic domain of the sulfolobus spindle-shaped2 viral integrase reveals an evolutionarily conserved catalytic core3 and supports a mechanism of dna cleavage in trans
21c5ks8F_



not modelled 58.4 4
PDB header:ligase
Chain: F: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
22c5ks8D_



not modelled 47.5 4
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
23c3bleA_



not modelled 45.4 15
PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in complexed with2 malonate
24c3ivuB_



not modelled 43.4 8
PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
25c2nx9B_



not modelled 39.8 10
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
26c1ydnA_



not modelled 38.1 8
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
27d1rqba2



not modelled 36.5 10
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
28c4lrtC_



not modelled 35.5 15
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal and solution structures of the bifunctional enzyme2 (aldolase/aldehyde dehydrogenase) from thermomonospora curvata,3 reveal a cofactor-binding domain motion during nad+ and coa4 accommodation whithin the shared cofactor-binding site
29c4jn6C_



not modelled 35.4 13
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
30c3dxiB_



not modelled 32.9 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of the n-terminal domain of a putative2 aldolase (bvu_2661) from bacteroides vulgatus
31c3ewbX_



not modelled 30.2 9
PDB header:transferase
Chain: X: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of n-terminal domain of putative 2-isopropylmalate2 synthase from listeria monocytogenes
32c3rmjB_



not modelled 27.1 8
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of truncated alpha-isopropylmalate synthase from2 neisseria meningitidis
33c2qqdG_



not modelled 27.0 25
PDB header:lyase
Chain: G: PDB Molecule:pyruvoyl-dependent arginine decarboxylase (ec
PDBTitle: n47a mutant of pyruvoyl-dependent arginine decarboxylase2 from methanococcus jannashii
34c6e1jB_



not modelled 26.2 9
PDB header:plant protein
Chain: B: PDB Molecule:2-isopropylmalate synthase, a genome specific 1;
PDBTitle: crystal structure of methylthioalkylmalate synthase (bjumam1.1) from2 brassica juncea
35c3eegB_



not modelled 25.2 13
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
36c2hjnA_



not modelled 24.8 14
PDB header:cell cycle
Chain: A: PDB Molecule:maintenance of ploidy protein mob1;
PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1
37c2xflB_



not modelled 24.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:dyne7;
PDBTitle: induced-fit and allosteric effects upon polyene binding2 revealed by crystal structures of the dynemicin3 thioesterase
38c2b9sA_



not modelled 23.6 18
PDB header:isomerase/dna
Chain: A: PDB Molecule:topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex
39c3hzpA_



not modelled 21.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
40c5eo4A_



not modelled 20.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:thioesterase;
PDBTitle: structural and biochemical characterization of the hypothetical2 protein sav2348 from staphylococcus aureus.
41c1nvmG_



not modelled 18.3 8
PDB header:lyase/oxidoreductase
Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
42c1ydoC_



not modelled 17.8 12
PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
43c2w3xE_



not modelled 17.7 20
PDB header:hydrolase
Chain: E: PDB Molecule:cale7;
PDBTitle: crystal structure of a bifunctional hotdog fold2 thioesterase in enediyne biosynthesis, cale7
44c4ov9A_



not modelled 17.1 8
PDB header:transferase
Chain: A: PDB Molecule:isopropylmalate synthase;
PDBTitle: structure of isopropylmalate synthase binding with alpha-2 isopropylmalate
45d1k4ta2



not modelled 17.0 16
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Eukaryotic DNA topoisomerase I, catalytic core
46d1rr8c1



not modelled 16.4 15
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Eukaryotic DNA topoisomerase I, catalytic core
47c3m0zD_



not modelled 14.9 13
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
48c1rr2A_



not modelled 13.5 10
PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
49c4lqqB_



not modelled 13.0 16
PDB header:transferase/transferase activator
Chain: B: PDB Molecule:cbk1 kinase activator protein mob2;
PDBTitle: crystal structure of the cbk1(t743e)-mob2 kinase-coactivator complex2 in crystal form b
50c2bcwC_



not modelled 12.4 14
PDB header:ribosome
Chain: C: PDB Molecule:elongation factor g;
PDBTitle: coordinates of the n-terminal domain of ribosomal protein l11,c-2 terminal domain of ribosomal protein l7/l12 and a portion of the g'3 domain of elongation factor g, as fitted into cryo-em map of an4 escherichia coli 70s*ef-g*gdp*fusidic acid complex
51c1a31A_



not modelled 11.6 19
PDB header:isomerase/dna
Chain: A: PDB Molecule:protein (topoisomerase i);
PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex
52d2hlja1



not modelled 10.5 18
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:4HBT-like
53d2oiwa1



not modelled 10.3 18
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:4HBT-like
54d2oafa1



not modelled 10.2 14
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:4HBT-like
55c2cw6B_



not modelled 10.0 11
PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
56c2ftpA_



not modelled 9.8 12
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
57d1x9ya2



not modelled 9.7 16
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Staphopain B, prodomain
58c3ck1B_



not modelled 9.3 18
PDB header:hydrolase
Chain: B: PDB Molecule:putative thioesterase;
PDBTitle: crystal structure of a putative thioesterase (reut_a2179) from2 ralstonia eutropha jmp134 at 1.74 a resolution
59c1p6gE_



not modelled 9.3 13
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: real space refined coordinates of the 30s subunit fitted into the low2 resolution cryo-em map of the ef-g.gtp state of e. coli 70s ribosome
60d1hjra_



not modelled 8.9 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
61d2uube1



not modelled 8.6 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
62c6a4cA_



not modelled 8.5 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mxan_0049;
PDBTitle: solution structure of mxan_0049
63d1w26a2



not modelled 8.4 19
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
64d1ka8a_



not modelled 7.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:P4 origin-binding domain-like
65d2qale1



not modelled 7.6 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
66d1h3oa_



not modelled 7.5 19
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
67c1h3oA_



not modelled 7.5 19
PDB header:transcription/tbp-associated factors
Chain: A: PDB Molecule:transcription initiation factor tfiid 135 kda subunit;
PDBTitle: crystal structure of the human taf4-taf12 (tafii135-tafii20) complex
68c4gj1A_



not modelled 7.5 11
PDB header:isomerase
Chain: A: PDB Molecule:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)
PDBTitle: crystal structure of 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)2 methylideneamino] imidazole-4-carboxamide isomerase (hisa).
69d1nvma2



not modelled 7.2 8
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
70c4y9iA_



not modelled 7.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
71d1p9ya_



not modelled 7.1 19
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
72c3bg3B_



not modelled 6.9 8
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
73d1t11a2



not modelled 6.8 10
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
74d1hlva2



not modelled 6.5 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
75d1p4wa_



not modelled 6.4 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
76c2d3o1_



not modelled 6.4 14
PDB header:ribosome
Chain: 1: PDB Molecule:trigger factor;
PDBTitle: structure of ribosome binding domain of the trigger factor on the 50s2 ribosomal subunit from d. radiodurans
77c3a9iA_



not modelled 6.2 6
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with lys
78d2ia9a1



not modelled 5.8 12
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
79c2zyfA_



not modelled 5.6 8
PDB header:transferase
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate
80c4lfuA_



not modelled 5.6 5
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
81d1hywa_



not modelled 5.5 23
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
82c2jwlB_



not modelled 5.5 22
PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
83c4exqA_



not modelled 5.3 22
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase (upd) from2 burkholderia thailandensis e264
84c2nscA_



not modelled 5.3 19
PDB header:chaperone
Chain: A: PDB Molecule:trigger factor;
PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima
85c3r5wO_



not modelled 5.3 23
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
86d1r3ba_



not modelled 5.2 9
Fold:Bromodomain-like
Superfamily:Mob1/phocein
Family:Mob1/phocein
87c3r5yC_



not modelled 5.2 25
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
88c2i9zB_



not modelled 5.1 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative septation protein spovg;
PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228
89d2i9xa1



not modelled 5.1 15
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
90c2ra4B_



not modelled 5.1 17
PDB header:cytokine
Chain: B: PDB Molecule:small-inducible cytokine a13;
PDBTitle: crystal structure of human monocyte chemoattractant protein 4 (mcp-2 4/ccl13)

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