Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1056_(-)_1177633_1178397
DateWed Jul 31 22:05:13 BST 2019
Unique Job ID7730311afb9f08f6
SequenceMSVDYPQMAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.557 Y:39.145 Z:39.474
Model (left) based on template c3djmA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein duf427;
PDBTitle: crystal structure of a protein of unknown function from duf427 family2 (rsph17029_0682) from rhodobacter sphaeroides 2.4.1 at 2.51 a3 resolution
Confidence and coverage
Confidence:100.0% Coverage: 43%
110 residues ( 43% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3djmA_



100.0 25
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein duf427;
PDBTitle: crystal structure of a protein of unknown function from duf427 family2 (rsph17029_0682) from rhodobacter sphaeroides 2.4.1 at 2.51 a3 resolution
2d1w66a1



29.9 13
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
3c5hj0C_



22.1 18
PDB header:ligase
Chain: C: PDB Molecule:kinetochore protein mis18;
PDBTitle: crystal structure of mis18 'yippee-like' domain
4c4b1qP_



21.0 41
PDB header:toxin
Chain: P: PDB Molecule:conotoxin cctx;
PDBTitle: nmr structure of the glycosylated conotoxin cctx from conus consors
5c4l0zA_



20.4 42
PDB header:transcription/dna
Chain: A: PDB Molecule:runt-related transcription factor 1;
PDBTitle: crystal structure of runx1 and ets1 bound to tcr alpha promoter2 (crystal form 2)
6c2mjcA_



14.1 67
PDB header:metal binding protein
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit g;
PDBTitle: zn-binding domain of eukaryotic translation initiation factor 3,2 subunit g
7c3icoA_



12.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 tuberculosis
8d1w9sa_



12.0 31
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
9c5o60X_



11.7 33
PDB header:ribosome
Chain: X: PDB Molecule:50s ribosomal protein l27;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
10c1z8rA_



11.7 44
PDB header:hydrolase
Chain: A: PDB Molecule:coxsackievirus b4 polyprotein;
PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51)
11c4lmgD_



10.1 33
PDB header:transcription activator/dna
Chain: D: PDB Molecule:iron-regulated transcriptional activator aft2;
PDBTitle: crystal structure of aft2 in complex with dna
12c4azzB_



10.1 11
PDB header:hydrolase
Chain: B: PDB Molecule:levanase;
PDBTitle: carbohydrate binding module cbm66 from bacillus subtilis
13c4e6nB_



9.7 19
PDB header:protein binding
Chain: B: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
14c6oswA_



9.3 13
PDB header:cell cycle
Chain: A: PDB Molecule:forkhead box m1;
PDBTitle: an order-to-disorder structural switch activates the foxm12 transcription factor
15c4cawA_



9.1 26
PDB header:transferase
Chain: A: PDB Molecule:glycylpeptide n-tetradecanoyltransferase;
PDBTitle: crystal structure of aspergillus fumigatus n-myristoyl2 transferase in complex with myristoyl coa and a pyrazole3 sulphonamide ligand
16c5c17A_



8.9 24
PDB header:lyase
Chain: A: PDB Molecule:merb2;
PDBTitle: crystal structure of the mercury-bound form of merb2
17c2kd2A_



8.9 16
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: nmr structure of faim-ctd
18d1txna_



7.9 40
Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase
19d1ne7a_



7.8 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
20d1m7ja2



7.8 26
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:D-aminoacylase
21c3oc6A_



not modelled 7.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form
22d1iica2



not modelled 7.3 22
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
23c6ch0I_



not modelled 7.2 15
PDB header:hydrolase
Chain: I: PDB Molecule:beta-lactamase;
PDBTitle: structure of the quorum quenching lactonase from alicyclobacillus2 acidoterrestris bound to a glycerol molecule
24d1vr3a1



not modelled 7.1 21
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
25d1rxta2



not modelled 6.8 13
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
26c2pcjB_



not modelled 6.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
27d1wh2a_



not modelled 6.7 18
Fold:GYF/BRK domain-like
Superfamily:GYF domain
Family:GYF domain
28d2cu2a1



not modelled 6.7 13
Fold:Single-stranded left-handed beta-helix
Superfamily:Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
Family:Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
29d2a1fa1



not modelled 6.6 17
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
30d1z9da1



not modelled 6.5 22
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
31d1iyka2



not modelled 6.2 12
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
32c2kl4A_



not modelled 6.2 4
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2032 protein;
PDBTitle: nmr structure of the protein nb7804a
33c2j0eA_



not modelled 6.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei
34d1tkla_



not modelled 6.1 40
Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase
35c5eo6A_



not modelled 6.1 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:coproporphyrinogen oxidase;
PDBTitle: coproporphyrinogen iii oxidase (hemf) from acinetobacter baumannii
36d1boba_



not modelled 6.0 27
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
37c3zf7t_



not modelled 5.9 27
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
38d2j44a2



not modelled 5.9 9
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
39c3cjsA_



not modelled 5.8 37
PDB header:transferase/ribosomal protein
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: minimal recognition complex between prma and ribosomal protein l11
40c3m9bK_



not modelled 5.7 21
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
41c2aexA_



not modelled 5.6 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial;
PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria
42c5xyiL_



not modelled 5.6 44
PDB header:ribosome
Chain: L: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
43c6fhtB_



not modelled 5.5 27
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
44d1tsfa_



not modelled 5.5 25
Fold:Rof/RNase P subunit-like
Superfamily:Rof/RNase P subunit-like
Family:RNase P subunit p29-like
45c3zr6A_



not modelled 5.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:galactocerebrosidase;
PDBTitle: structure of galactocerebrosidase from mouse in complex with galactose
46c3nmbA_



not modelled 5.4 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative sugar hydrolase;
PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution
47c3mhxB_



not modelled 5.2 8
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
48c2c26A_



not modelled 5.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: structural basis for the promiscuous specificity of the2 carbohydrate-binding modules from the beta-sandwich super3 family
49d2k49a1



not modelled 5.2 11
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
50d1lnga_



not modelled 5.1 28
Fold:SRP19
Superfamily:SRP19
Family:SRP19
51c2xhaB_



not modelled 5.1 20
PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg)

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