Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1061_(-)_1184020_1184883
DateWed Jul 31 22:05:13 BST 2019
Unique Job IDdd16160f9179a52b
SequenceMCRLFGLHSG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.103 Y:58.103 Z:48.065
Model (left) based on template d1te5a_
Top template information
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
Confidence and coverage
Confidence:100.0% Coverage: 85%
245 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1te5a_



100.0 23
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
2c4zfjB_



100.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase egtc;
PDBTitle: ergothioneine-biosynthetic ntn hydrolase egtc, apo form
3c1ecjB_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate
PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
4d1ecfa2



100.0 21
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
5c3mdnD_



100.0 24
PDB header:transferase
Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein;
PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi
6c1gph1_



100.0 21
PDB header:transferase
Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase;
PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
7d1gph12



100.0 22
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
8d1xffa_



100.0 22
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
9c1jxaA_



100.0 24
PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
10c1ct9D_



100.0 16
PDB header:ligase
Chain: D: PDB Molecule:asparagine synthetase b;
PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
11d1ct9a2



99.9 18
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
12d1ofda3



99.9 18
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
13d1ea0a3



99.9 19
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
14c1q15A_



99.9 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cara;
PDBTitle: carbapenam synthetase
15c1m1zB_



99.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactam synthetase;
PDBTitle: beta-lactam synthetase apo enzyme
16d1jgta2



99.8 17
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
17d1q15a2



99.8 12
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
18c1lm1A_



99.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
19c2vdcF_



99.4 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
20c6f1sA_



29.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:cgliir protein;
PDBTitle: c-terminal domain of cgli restriction endonuclease h subunit
21c1y8aA_



not modelled 18.8 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1437;
PDBTitle: structure of gene product af1437 from archaeoglobus fulgidus
22d1zyea1



not modelled 17.9 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
23c2rprA_



not modelled 17.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:flywch-type zinc finger-containing protein 1;
PDBTitle: solution structure of the fifth flywch domain of flywch-type2 zinc finger-containing protein 1
24d1kwga1



not modelled 16.4 30
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
25c3sbtB_



not modelled 14.2 11
PDB header:splicing
Chain: B: PDB Molecule:a1 cistron-splicing factor aar2;
PDBTitle: crystal structure of a aar2-prp8 complex
26c2j034_



not modelled 13.7 30
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.
27d2j0141



not modelled 13.7 30
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
28c2je2A_



not modelled 12.3 20
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form
29c2hgj3_



not modelled 12.1 30
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of the 70s thermus thermophilus ribosome showing how2 the 16s 3'-end mimicks mrna e and p codons. this entry 2hgj contains3 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb4 entry 2hgi.
30c3bbo1_



not modelled 11.9 33
PDB header:ribosome
Chain: 1: PDB Molecule:ribosomal protein l31;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
31c5o60g_



not modelled 11.7 30
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
32c4i43A_



not modelled 11.0 17
PDB header:splicing
Chain: A: PDB Molecule:a1 cistron-splicing factor aar2;
PDBTitle: crystal structure of prp8:aar2 complex
33c2b664_



not modelled 10.9 33
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
34c6dzpg_



not modelled 9.8 33
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
35d1vs6z1



not modelled 9.6 33
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
36c1zyeL_



not modelled 9.6 20
PDB header:oxidoreductase
Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase;
PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii
37c2ymvA_



not modelled 9.3 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:acg nitroreductase;
PDBTitle: structure of reduced m smegmatis 5246, a homologue of m.2 tuberculosis acg
38c1nh1A_



not modelled 8.3 23
PDB header:avirulence protein
Chain: A: PDB Molecule:avirulence b protein;
PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae.
39d1nh1a_



not modelled 8.3 23
Fold:Antivirulence factor
Superfamily:Antivirulence factor
Family:Antivirulence factor
40c2lojA_



not modelled 8.2 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of tstm1273 from salmonella typhimurium lt2,2 nesg target stt322, csgid target idp01027 and ocsp target tstm1273
41c2jraB_



not modelled 7.9 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein rpa2121;
PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6
42c1nwdC_



not modelled 7.5 54
PDB header:binding protein/hydrolase
Chain: C: PDB Molecule:glutamate decarboxylase;
PDBTitle: solution structure of ca2+/calmodulin bound to the c-2 terminal domain of petunia glutamate decarboxylase
43c1nwdB_



not modelled 7.5 54
PDB header:binding protein/hydrolase
Chain: B: PDB Molecule:glutamate decarboxylase;
PDBTitle: solution structure of ca2+/calmodulin bound to the c-2 terminal domain of petunia glutamate decarboxylase
44c2hl7A_



not modelled 6.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
45c2dplA_



not modelled 6.8 21
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b;
PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3
46d1ueka2



not modelled 6.8 23
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
47c4lmiA_



not modelled 6.7 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative ketosteroid isomerase from kribbella2 flavida dsm 17836
48d3en8a1



not modelled 6.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rpa4348-like
49c2oqbA_



not modelled 6.5 16
PDB header:transferase,gene regulation
Chain: A: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: crystal structure of the n-terminal domain of coactivator-associated2 methyltransferase 1 (carm1)
50c2kq6A_



not modelled 6.5 38
PDB header:transport protein
Chain: A: PDB Molecule:polycystin-2;
PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity
51c1vliA_



not modelled 6.3 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
52c2kleA_



not modelled 6.3 38
PDB header:membrane protein
Chain: A: PDB Molecule:polycystin-2;
PDBTitle: isic refined solution structure of the calcium binding2 domain of the c-terminal cytosolic domain of polycystin-2
53c2mhhA_



not modelled 6.3 20
PDB header:metal binding protein
Chain: A: PDB Molecule:polycystic kidney disease protein 2;
PDBTitle: solution structure of a ef-hand domain from sea urchin polycystin-2
54c3d3rA_



not modelled 5.9 22
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
55d2z1ca1



not modelled 5.8 22
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
56d1vlia2



not modelled 5.7 19
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
57d1r0va1



not modelled 5.7 26
Fold:Restriction endonuclease-like
Superfamily:tRNA-intron endonuclease catalytic domain-like
Family:tRNA-intron endonuclease catalytic domain-like
58d3d3ra1



not modelled 5.7 22
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
59c3ipwA_



not modelled 5.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase tatd family protein;
PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica
60d1f0la1



not modelled 5.5 50
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Diphtheria toxin, C-terminal domain
Family:Diphtheria toxin, C-terminal domain
61c1gpmD_



not modelled 5.4 18
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
62c2kw0A_



not modelled 5.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
63d2naca2



not modelled 5.3 30
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
64c3hshA_



not modelled 5.0 13
PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)

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