Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1078_(pra)_1203318_1204040
DateWed Jul 31 22:05:15 BST 2019
Unique Job ID3270c813e480a9c0
SequenceMTEQPPPGGS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.422 Y:38.492 Z:60.573
Model (left) based on template c4nl6C_
Top template information
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
Confidence and coverage
Confidence: 95.3% Coverage: 30%
73 residues ( 30% of your sequence) have been modelled with 95.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4nl6C_
95.3 32
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
2c2kpyA_
47.1 33
PDB header:allergen
Chain: A: PDB Molecule:major pollen allergen art v 1;
PDBTitle: solution structure of the major allergen of artemisia vulgaris (art v2 1)
3c2k1aA_
36.6 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
4c2kncA_
34.8 12
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
5c2kncB_
21.6 17
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
6c2axtc_
17.8 12
PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
7d2axtc1
17.8 12
Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
8d1v54j_
16.0 20
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIa
Family:Mitochondrial cytochrome c oxidase subunit VIIa
9d1hywa_
16.0 19
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
10c5z62J_
14.0 17
PDB header:electron transport
Chain: J: PDB Molecule:cytochrome c oxidase subunit 7a2, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
11c2y69W_
14.0 20
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase polypeptide 7a1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
12d1u9da_
13.9 24
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:VC0714-like
13c6m97A_
13.7 14
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
14c5zazA_
13.4 20
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
15c2voyB_
12.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
16d2glza1
12.3 19
Fold:FwdE/GAPDH domain-like
Superfamily:FwdE-like
Family:FwdE-like
17c3b8eB_
12.2 10
PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit
PDBTitle: crystal structure of the sodium-potassium pump
18c3d00A_
11.5 18
PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
19c4y7jE_
10.8 16
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
20c5ireA_
9.7 22
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
21c2l8sA_
not modelled 9.6 16
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
22c5o6vC_
not modelled 9.3 27
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
23c2clbP_
not modelled 9.2 9
PDB header:metal binding protein
Chain: P: PDB Molecule:dps-like protein;
PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly
24c5xvjB_
not modelled 9.0 15
PDB header:gene regulation
Chain: B: PDB Molecule:phd finger protein alfin-like 7;
PDBTitle: crystal structure of al7 pal domain
25c4m1aB_
not modelled 8.8 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a domain of unknown function (duf1904) from2 sebaldella termitidis atcc 33386
26d1k28d2
not modelled 8.7 19
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
27c2l6wA_
not modelled 8.5 22
PDB header:membrane protein
Chain: A: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
28c2l6wB_
not modelled 8.5 22
PDB header:membrane protein
Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
29c2xq2A_
not modelled 8.4 12
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
30c4jcbD_
not modelled 8.4 25
PDB header:photosynthesis
Chain: D: PDB Molecule:light-harvesting protein b-875 alpha chain;
PDBTitle: rc-lh1-pufx dimer complex from rhodobacter sphaeroides
31c3iz6S_
not modelled 8.1 20
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
32c4xw5B_
not modelled 7.9 13
PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase inhibitor alpha;
PDBTitle: x-ray structure of pkac with atp, cp20, calcium ions
33c4xw6B_
not modelled 7.9 13
PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase inhibitor alpha;
PDBTitle: x-ray structure of pkac with adp, free phosphate ion, cp20, magnesium2 ions
34c3kdpD_
not modelled 7.8 9
PDB header:hydrolase
Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1;
PDBTitle: crystal structure of the sodium-potassium pump
35c4qmdB_
not modelled 7.4 13
PDB header:cell adhesion
Chain: B: PDB Molecule:envoplakin;
PDBTitle: crystal structure of human envoplakin plakin repeat domain
36c4q28B_
not modelled 7.2 17
PDB header:structural protein
Chain: B: PDB Molecule:periplakin;
PDBTitle: crystal structure of the plectin 1 and 2 repeats of the human2 periplakin. northeast structural genomics consortium (nesg) target3 hr9083a
37c2n03A_
not modelled 6.9 13
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: solution nmr structure plectin repeat domain 6 (4403-4606) of plectin2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr6354e
38d1ymga1
not modelled 6.7 18
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
39c1ymgA_
not modelled 6.7 18
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
40c5kzoA_
not modelled 6.6 21
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
41c1xrdA_
not modelled 6.6 22
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
42d1xrda1
not modelled 6.6 22
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
43c5dzzA_
not modelled 6.4 19
PDB header:structural protein
Chain: A: PDB Molecule:desmoplakin;
PDBTitle: structural characterization of intermediate filaments binding domain2 of desmoplakin
44d1lm5a_
not modelled 6.1 10
Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Plakin repeat
Family:Plakin repeat
45c3admD_
not modelled 5.8 52
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
46c3a19E_
not modelled 5.8 50
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
47c3a19C_
not modelled 5.8 50
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
48c3wmmY_
not modelled 5.8 22
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
49c6c6lO_
not modelled 5.6 19
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
50d2gvia1
not modelled 5.6 24
Fold:FwdE/GAPDH domain-like
Superfamily:FwdE-like
Family:FwdE-like
51c5yq72_
not modelled 5.5 22
PDB header:photosynthesis
Chain: 2: PDB Molecule:beta subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
52c2yevB_
not modelled 5.5 5
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
53c2n28A_
not modelled 5.4 11
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
54c3a08F_
not modelled 5.4 57
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
55c3admA_
not modelled 5.4 52
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
56c3admB_
not modelled 5.4 52
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
57c3admF_
not modelled 5.4 52
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
58c3admE_
not modelled 5.4 52
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
59c2gviA_
not modelled 5.4 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution
60c3ixzB_
not modelled 5.4 13
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
61c2cuoF_
not modelled 5.4 48
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
62c2cuoC_
not modelled 5.4 48
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
63c2lu2A_
not modelled 5.3 27
PDB header:cell adhesion
Chain: A: PDB Molecule:microneme tgmic5 protein;
PDBTitle: mic5 regulates the activity of toxoplasma subtilisin 1 by mimicking a2 subtilisin prodomain
64d1lm7a_
not modelled 5.3 19
Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Plakin repeat
Family:Plakin repeat
65c3a19A_
not modelled 5.3 48
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
66c2d3hC_
not modelled 5.3 48
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
67c2lx0A_
not modelled 5.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
68c3a19D_
not modelled 5.2 54
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
69c4aq5C_
not modelled 5.2 10
PDB header:membrane protein
Chain: C: PDB Molecule:acetylcholine receptor delta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
70c2bg9C_
not modelled 5.2 10
PDB header:ion channel/receptor
Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
71c3a19B_
not modelled 5.1 55
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
72c2d3hB_
not modelled 5.1 55
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
73c2d3hA_
not modelled 5.1 55
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
74c3a19F_
not modelled 5.1 57
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
75c3a08D_
not modelled 5.1 57
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
76c2d3hD_
not modelled 5.1 57
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below