Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1081c_(-)_1205989_1206423
DateWed Jul 31 22:05:15 BST 2019
Unique Job ID194d4a50124e8133
SequenceMTHTPIPRPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:69.486 Y:42.694 Z:25.484
Model (left) based on template c6f0kA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
Confidence and coverage
Confidence: 19.8% Coverage: 31%
44 residues ( 31% of your sequence) have been modelled with 19.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6f0kA_



19.8 20
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
2c2kncA_



19.0 3
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
3d3cnva1



15.4 15
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
4d2g5da1



13.9 8
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
5c6btmA_



13.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
6d2aqaa1



13.0 26
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
7c3f8lC_



12.8 22
PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional repressor phnf;
PDBTitle: crystal structure of the effector domain of phnf from mycobacterium2 smegmatis
8c2lx0A_



12.5 4
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
9d1ekra_



12.2 13
Fold:Ferredoxin-like
Superfamily:Molybdenum cofactor biosynthesis protein C, MoaC
Family:Molybdenum cofactor biosynthesis protein C, MoaC
10c6f0kC_



12.1 19
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
11c3ir3B_



11.6 11
PDB header:lyase
Chain: B: PDB Molecule:3-hydroxyacyl-thioester dehydratase 2;
PDBTitle: crystal structure of human 3-hydroxyacyl-thioester dehydratase 22 (htd2)
12d1xo8a_



10.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:LEA14-like
Family:LEA14-like
13c1yycA_



10.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative late embryogenesis abundant protein;
PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1
14c2l8sA_



10.6 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
15c2k1aA_



10.3 0
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
16c4zsiA_



9.9 16
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor dasr;
PDBTitle: crystal structure of the effector-binding domain of dasr (dasr-ebd) in2 complex with glucosamine-6-phosphate
17c3cmgA_



9.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
18c6btmC_



9.3 16
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
19c4zo9B_



9.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:lin1840 protein;
PDBTitle: crystal structure of mutant (d270a) beta-glucosidase from listeria2 innocua in complex with laminaribiose
20c5ow3C_



8.7 13
PDB header:membrane protein
Chain: C: PDB Molecule:protein hapless 2;
PDBTitle: crystal structure of a c-terminally truncated trimeric ectodomain of2 the arabidopsis thaliana gamete fusion protein hap2
21d3bwga2



not modelled 8.5 19
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
22c6mitC_



not modelled 8.2 20
PDB header:lipid transport
Chain: C: PDB Molecule:lipopolysaccharide export system protein lptc;
PDBTitle: lptbfgc from enterobacter cloacae
23c5yotB_



not modelled 8.1 19
PDB header:hydrolase
Chain: B: PDB Molecule:isoprimeverose-producing enzyme;
PDBTitle: isoprimeverose-producing enzyme from aspergillus oryzae in complex2 with isoprimeverose
24d2apob1



not modelled 8.1 22
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
25c5z62N_



not modelled 8.1 6
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
26c4i3gB_



not modelled 7.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of desr, a beta-glucosidase from streptomyces2 venezuelae in complex with d-glucose.
27c2ideE_



not modelled 7.6 16
PDB header:biosynthetic protein
Chain: E: PDB Molecule:molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of the molybdenum cofactor biosynthesis protein c2 (ttha1789) from thermus theromophilus hb8
28d2gkea2



not modelled 7.4 11
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:Diaminopimelate epimerase
29c6hu9e_



not modelled 7.4 7
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
30c3butA_



not modelled 7.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af_0446;
PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus
31c4d0jD_



not modelled 7.0 15
PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of glycoside hydrolase family 3 beta-2 glucosidase cel3a from the moderately thermophilic fungus3 rasamsonia emersonii
32c2ohdB_



not modelled 7.0 24
PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of hypothetical molybdenum cofactor biosynthesis2 protein c from sulfolobus tokodaii
33d2e74g1



not modelled 6.8 20
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
34c2eknC_



not modelled 6.7 24
PDB header:biosynthetic protein
Chain: C: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: structure of ph1811 protein from pyrococcus horikoshii
35c3g3oA_



not modelled 6.3 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:vacuolar transporter chaperone 2;
PDBTitle: crystal structure of the cytoplasmic tunnel domain in yeast2 vtc2p
36d3ddva1



not modelled 6.3 13
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
37d1gr0a1



not modelled 6.1 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
38c5cpgA_



not modelled 5.9 18
PDB header:lyase
Chain: A: PDB Molecule:(r)-specific enoyl-coa hydratase;
PDBTitle: r-hydratase phaj1 from pseudomonas aeruginosa in the unliganded form
39c3lheA_



not modelled 5.8 22
PDB header:transcription regulator
Chain: A: PDB Molecule:gntr family transcriptional regulator;
PDBTitle: the crystal structure of the c-terminal domain of a gntr2 family transcriptional regulator from bacillus anthracis3 str. sterne
40d2oeza1



not modelled 5.7 25
Fold:YacF-like
Superfamily:YacF-like
Family:YacF-like
41d2ey4e1



not modelled 5.6 35
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
42c4bq3A_



not modelled 5.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:b-agarase;
PDBTitle: structural analysis of an exo-beta-agarase
43c5tf0B_



not modelled 5.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 n-terminal domain protein;
PDBTitle: crystal structure of glycosil hydrolase family 3 n-terminal domain2 protein from bacteroides intestinalis
44c6cfwG_



not modelled 5.5 36
PDB header:membrane protein
Chain: G: PDB Molecule:monovalent cation/h+ antiporter subunit c;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
45c1zzaA_



not modelled 5.4 32
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
46c2m6oA_



not modelled 5.3 19
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
47c5jp0A_



not modelled 5.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase bogh3b;
PDBTitle: bacteroides ovatus xyloglucan pul gh3b with bound glucose
48c6elhA_



not modelled 5.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
49c5dkoA_



not modelled 5.2 25
PDB header:replication
Chain: A: PDB Molecule:cell division protein zapd;
PDBTitle: the structure of escherichia coli zapd
50c2r39A_



not modelled 5.2 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fixg-related protein;
PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below