Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1083_(-)_1207388_1207654
DateWed Jul 31 22:05:16 BST 2019
Unique Job IDff6030ec7da00957
SequenceVNQILLSVIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.574 Y:11.013 Z:28.177
Model (left) based on template c6mctK_
Top template information
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
Confidence and coverage
Confidence: 76.5% Coverage: 19%
17 residues ( 19% of your sequence) have been modelled with 76.5% confidence by the single highest scoring template.
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Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6mctK_
76.5 53
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
2c6mctA_
76.5 53
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
3c6mctN_
76.5 53
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
4c6mctD_
76.5 53
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
5c6mctC_
76.5 53
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
6c6mctB_
76.5 53
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
7c6mctI_
76.5 53
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
8c6mctL_
76.5 53
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
9c6mctH_
76.5 53
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
10c6mctO_
76.5 53
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
11c6mctM_
76.5 53
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
12c6mpwA_
76.5 53
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
13c6mq2D_
76.5 53
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
14c6mctE_
76.5 53
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
15c6mctJ_
75.5 53
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
16c6mctF_
75.5 53
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
17c6mctG_
73.9 53
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
18c6mpwD_
73.3 56
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
19c6mpwE_
73.3 56
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
20c6mq2B_
73.3 56
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
21c6mpwB_
not modelled 73.3 56
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
22c6mq2A_
not modelled 73.3 56
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
23c6mq2E_
not modelled 73.3 56
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
24c6mq2C_
not modelled 73.3 56
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
25c6mpwC_
not modelled 73.3 56
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
26c5v2sA_
not modelled 69.1 28
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
27c6hu9e_
not modelled 51.2 17
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
28c2rddB_
not modelled 46.5 18
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
29c4gn0D_
not modelled 41.7 0
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
30c6bm8A_
not modelled 39.2 42
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
31c3kysB_
not modelled 37.3 56
PDB header:transcription/protein binding
Chain: B: PDB Molecule:65 kda yes-associated protein;
PDBTitle: crystal structure of human yap and tead complex
32c2n2aA_
not modelled 28.8 21
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
33d1ojxa_
not modelled 28.5 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
34c5jefA_
not modelled 28.1 11
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
35c3juaB_
not modelled 26.3 56
PDB header:transcription
Chain: B: PDB Molecule:65 kda yes-associated protein;
PDBTitle: structural basis of yap recognition by tead4 in the hippo pathway
36d1v54d_
not modelled 25.2 8
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
37d1c7qa_
not modelled 25.1 24
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
38c2y69Q_
not modelled 24.2 12
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
39c2wu8A_
not modelled 23.3 17
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
40c5m73H_
not modelled 23.1 54
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
41c2jo1A_
not modelled 22.7 25
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
42c3hjbA_
not modelled 22.2 20
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
43c2n90A_
not modelled 20.8 44
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
44c2n90B_
not modelled 20.8 44
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
45c2m20B_
not modelled 18.9 12
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
46c4em6D_
not modelled 16.8 17
PDB header:isomerase
Chain: D: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: the structure of glucose-6-phosphate isomerase (gpi) from brucella2 melitensis
47c3m4wH_
not modelled 16.6 75
PDB header:signaling protein/signaling protein
Chain: H: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: structural basis for the negative regulation of bacterial stress2 response by rseb
48c3ljkA_
not modelled 16.6 12
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
49c6c14A_
not modelled 16.4 19
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
50c2ifmA_
not modelled 15.5 32
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
51c1ql1A_
not modelled 15.5 32
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
52c3j1rD_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
53c3j1rN_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
54c3j1rM_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
55c3j1rB_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
56c3j1rT_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
57c3j1rJ_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
58c3j1rI_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
59c3j1rG_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
60c3j1rP_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
61c3j1rU_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
62c3j1rL_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
63c3j1rC_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
64c3j1rO_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
65c3j1rK_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
66c3j1rF_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
67c3j1rR_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
68c3j1rS_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
69c3j1rE_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
70c3j1rH_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
71c3j1rA_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
72c3j1rQ_
not modelled 13.9 25
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
73c6ic4C_
not modelled 13.4 22
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
74c6mitC_
not modelled 13.0 16
PDB header:lipid transport
Chain: C: PDB Molecule:lipopolysaccharide export system protein lptc;
PDBTitle: lptbfgc from enterobacter cloacae
75c2q8nB_
not modelled 11.9 27
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec 5.3.1.9)2 (tm1385) from thermotoga maritima at 1.82 a resolution
76c2lp1A_
not modelled 11.6 18
PDB header:membrane protein
Chain: A: PDB Molecule:c99;
PDBTitle: the solution nmr structure of the transmembrane c-terminal domain of2 the amyloid precursor protein (c99)
77c6nk6B_
not modelled 11.5 35
PDB header:virus like particle/signaling protein
Chain: B: PDB Molecule:e1 glycoprotein;
PDBTitle: electron cryo-microscopy of chikungunya vlp in complex with mouse2 mxra8 receptor
78d1k1va_
not modelled 11.3 46
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
79c2ks1A_
not modelled 11.1 31
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
80c2na6C_
not modelled 11.1 33
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
81c2na6A_
not modelled 11.1 33
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
82c2mpwA_
not modelled 11.0 38
PDB header:peptidoglycan binding protein
Chain: A: PDB Molecule:intimin;
PDBTitle: solution structure of the lysm region of the e. coli intimin2 periplasmic domain
83d1u0fa_
not modelled 10.7 22
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
84c1t10A_
not modelled 10.5 17
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
85d2o3la1
not modelled 10.5 7
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
86c4zigB_
not modelled 10.1 29
PDB header:apoptosis
Chain: B: PDB Molecule:bh3-interacting domain death agonist;
PDBTitle: crystal structure of core/latch dimer of bax in complex with2 bidbh3mini
87c2jwaA_
not modelled 10.0 31
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
88c6humC_
not modelled 10.0 16
PDB header:proton transport
Chain: C: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 3;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
89c6bzcA_
not modelled 9.8 10
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase from2 elizabethkingia anophelis with bound glucose-6-phosphate
90c4hyzA_
not modelled 9.7 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3887 family protein (rumgna_01855) from2 ruminococcus gnavus atcc 29149 at 2.25 a resolution
91c1dxzA_
not modelled 9.6 32
PDB header:transmembrane protein
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: m2 transmembrane segment of alpha-subunit of nicotinic2 acetylcholine receptor from torpedo californica, nmr, 203 structures
92c2na6B_
not modelled 9.2 33
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
93c2mkvA_
not modelled 8.8 22
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
94c2m3eA_
not modelled 8.7 33
PDB header:membrane protein
Chain: A: PDB Molecule:integrin alpha-l;
PDBTitle: the integrin alpha l transmembrane domain in bicelles: structure and2 interaction with integrin beta 2
95d1lkta_
not modelled 8.7 21
Fold:Head-binding domain of phage P22 tailspike protein
Superfamily:Head-binding domain of phage P22 tailspike protein
Family:Head-binding domain of phage P22 tailspike protein
96c6hwhX_
not modelled 8.4 24
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
97d1gzda_
not modelled 8.2 20
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
98d1q50a_
not modelled 7.8 17
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
99d1iata_
not modelled 7.4 20
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below