Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1086_(-)_1210600_1211388
DateWed Jul 31 22:05:16 BST 2019
Unique Job IDec070a093dc3ca34
SequenceVEIIPPRLKE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.698 Y:47.260 Z:44.784
Model (left) based on template c2vg2C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
Confidence and coverage
Confidence:100.0% Coverage: 88%
231 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vg2C_



100.0 35
PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
2c4h8eA_



100.0 30
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of s. aureus undecaprenyl diphosphate synthase in complex2 with fpp and sulfate
3c2vfwB_



100.0 100
PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
4c5hc7A_



100.0 32
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:prenyltransference for protein;
PDBTitle: crystal structure of lavandulyl diphosphate synthase from lavandula x2 intermedia in complex with s-thiolo-isopentenyldiphosphate
5c4q9mA_



100.0 33
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:isoprenyl transferase;
PDBTitle: crystal structure of upps in complex with fpp and an allosteric2 inhibitor
6c5hxpA_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:(2z,6z)-farnesyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of z,z-farnesyl diphosphate synthase (d71m, e75a and2 h103y mutants) complexed with ipp
7c5gukA_



100.0 28
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cyclolavandulyl diphosphate synthase;
PDBTitle: crystal structure of apo form of cyclolavandulyl diphosphate synthase2 (clds) from streptomyces sp. cl190
8d1ueha_



100.0 33
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
9c6acsA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:ditrans,polycis-undecaprenyl-diphosphate synthase ((2e,6e)-
PDBTitle: poly-cis-prenyltransferase
10c5xk9F_



100.0 24
PDB header:transferase
Chain: F: PDB Molecule:undecaprenyl diphosphate synthase;
PDBTitle: crystal structure of isosesquilavandulyl diphosphate synthase from2 streptomyces sp. strain cnh-189 in complex with gspp and dmapp
11c1jp3A_



100.0 32
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase
12d1f75a_



100.0 30
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
13c3ugsB_



100.0 30
PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
14c2d2rA_



100.0 31
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase
15c6jcnB_



100.0 19
PDB header:transferase
Chain: B: PDB Molecule:dehydrodolichyl diphosphate synthase complex subunit nus1;
PDBTitle: yeast dehydrodolichyl diphosphate synthase complex subunit nus1
16c4cmxB_



99.3 18
PDB header:nuclear protein
Chain: B: PDB Molecule:rv3378c;
PDBTitle: crystal structure of rv3378c
17c3cprB_



70.0 13
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthetase;
PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution
18c3s5oA_



64.1 13
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial;
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
19c5ak1A_



62.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: the penta-modular cellulosomal arabinoxylanase ctxyl5a2 structure as revealed by x-ray crystallography
20c3fluD_



58.2 15
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
21c3n58D_



not modelled 58.1 8
PDB header:hydrolase
Chain: D: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form
22c2rfgB_



not modelled 58.1 13
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution
23c3si9B_



not modelled 57.1 15
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
24c5n6yD_



not modelled 56.8 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase vanadium-iron protein alpha chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
25c2ou4C_



not modelled 56.6 12
PDB header:isomerase
Chain: C: PDB Molecule:d-tagatose 3-epimerase;
PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii
26c3daqB_



not modelled 55.4 13
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
27c5iq5A_



not modelled 52.8 17
PDB header:viral protein
Chain: A: PDB Molecule:macro domain;
PDBTitle: nmr solution structure of mayaro virus macro domain
28d1hl2a_



not modelled 51.7 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
29c2hk1D_



not modelled 50.3 14
PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
30c3pueA_



not modelled 49.9 14
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
31c3zddA_



not modelled 49.7 14
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
32d2a6na1



not modelled 49.1 12
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
33c6c34A_



not modelled 48.8 15
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
34c5ud6B_



not modelled 47.2 16
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dhdps from cyanidioschyzon merolae with lysine2 bound
35c2v9dB_



not modelled 47.0 14
PDB header:lyase
Chain: B: PDB Molecule:yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
36c3qfeB_



not modelled 47.0 13
PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
37d1xxxa1



not modelled 46.9 19
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
38c3bdkB_



not modelled 46.8 17
PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
39c3noeA_



not modelled 46.5 12
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
40c2yxgD_



not modelled 45.8 14
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
41c3fkkA_



not modelled 45.2 12
PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
42c3dx5A_



not modelled 45.0 9
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
43d1i60a_



not modelled 44.0 9
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
44c3d0cB_



not modelled 43.6 15
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from oceanobacillus2 iheyensis at 1.9 a resolution
45c2vc6A_



not modelled 43.3 15
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of mosa from s. meliloti with pyruvate bound
46c3n2xB_



not modelled 41.9 14
PDB header:lyase
Chain: B: PDB Molecule:uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
47c3b4uB_



not modelled 39.0 14
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
48c3lciA_



not modelled 38.9 16
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: the d-sialic acid aldolase mutant v251w
49c3g0sA_



not modelled 38.3 9
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2
50c3cnyA_



not modelled 37.8 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
51c3cqkB_



not modelled 36.5 8
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
52d1o5ka_



not modelled 35.5 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
53d1xkya1



not modelled 35.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
54c4i7vD_



not modelled 35.0 15
PDB header:biosynthetic protein
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: agrobacterium tumefaciens dhdps with pyruvate
55c5afdA_



not modelled 34.9 12
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: native structure of n-acetylneuramininate lyase (sialic acid aldolase)2 from aliivibrio salmonicida
56c4ah7C_



not modelled 34.6 13
PDB header:lyase
Chain: C: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: structure of wild type stapylococcus aureus n-acetylneuraminic acid2 lyase in complex with pyruvate
57c3qxbB_



not modelled 34.1 15
PDB header:isomerase
Chain: B: PDB Molecule:putative xylose isomerase;
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution
58c3lerA_



not modelled 32.5 18
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168
59c5ktlA_



not modelled 31.9 13
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from the industrial and evolutionarily2 important cyanobacteria anabaena variabilis.
60c5ui3C_



not modelled 31.7 16
PDB header:lyase
Chain: C: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dhdps from chlamydomonas reinhardtii
61c3gqeA_



not modelled 30.0 15
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus
62c4iqyB_



not modelled 28.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:o-acetyl-adp-ribose deacetylase macrod2;
PDBTitle: crystal structure of the human protein-proximal adp-ribosyl-hydrolase2 macrod2
63c3oneA_



not modelled 28.7 11
PDB header:hydrolase/hydrolase substrate
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of lupinus luteus s-adenosyl-l-homocysteine2 hydrolase in complex with adenine
64c3eb2A_



not modelled 28.5 14
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
65c3bi8A_



not modelled 28.4 15
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum
66c5c54D_



not modelled 27.9 16
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase/n-acetylneuraminate lyase;
PDBTitle: crystal structure of a novel n-acetylneuraminic acid lyase from2 corynebacterium glutamicum
67c4nq1B_



not modelled 27.8 9
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: legionella pneumophila dihydrodipicolinate synthase with first2 substrate pyruvate bound in the active site
68c6mqhA_



not modelled 27.2 18
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate synthase (htpa2 synthase) from burkholderia mallei
69c6d0gA_



not modelled 27.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:pirin family protein;
PDBTitle: 1.78 angstrom resolution crystal structure of quercetin 2,3-2 dioxygenase from acinetobacter baumannii
70c4umlA_



not modelled 25.5 4
PDB header:signaling protein
Chain: A: PDB Molecule:ganglioside-induced differentiation-associated protein 2;
PDBTitle: crystal structure of ganglioside induced differentiation2 associated protein 2 (gdap2) macro domain
71c2x47A_



not modelled 25.5 7
PDB header:signaling protein
Chain: A: PDB Molecule:macro domain-containing protein 1;
PDBTitle: crystal structure of human macrod1
72c6daqA_



not modelled 25.1 13
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate
73c2ynmD_



not modelled 25.0 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
74d1vk1a_



not modelled 24.9 38
Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Hypothetical protein PF0380
75d1miob_



not modelled 24.1 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
76c4ur7B_



not modelled 23.4 13
PDB header:lyase
Chain: B: PDB Molecule:keto-deoxy-d-galactarate dehydratase;
PDBTitle: crystal structure of keto-deoxy-d-galactarate dehydratase2 complexed with pyruvate
77c2f9iC_



not modelled 23.2 12
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
78c2ksnA_



not modelled 22.8 36
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
79d1cmwa2



not modelled 22.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
80c1cmwA_



not modelled 22.1 19
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
81d2f9ya1



not modelled 21.9 12
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
82c4uxdC_



not modelled 21.9 11
PDB header:lyase
Chain: C: PDB Molecule:2-dehydro-3-deoxy-d-gluconate/2-dehydro-3-deoxy-
PDBTitle: 2-keto 3-deoxygluconate aldolase from picrophilus torridus
83c4xkyC_



not modelled 21.5 12
PDB header:lyase
Chain: C: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from the commensal bacterium2 bacteroides thetaiotaomicron at 2.1 a resolution
84c3d64A_



not modelled 21.4 9
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
85c4icnB_



not modelled 21.2 10
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from shewanella benthica
86c2d1gB_



not modelled 21.1 11
PDB header:hydrolase
Chain: B: PDB Molecule:acid phosphatase;
PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate
87c2r8wB_



not modelled 20.3 11
PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
88c3vylB_



not modelled 20.2 11
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose 3-epimerase;
PDBTitle: structure of l-ribulose 3-epimerase
89c5n6yE_



not modelled 19.9 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrogenase vanadium-iron protein beta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
90c2pfuA_



not modelled 19.8 14
PDB header:transport protein
Chain: A: PDB Molecule:biopolymer transport exbd protein;
PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli
91c5by4A_



not modelled 19.6 24
PDB header:protein transport
Chain: A: PDB Molecule:protein tolr;
PDBTitle: structure and function of the escherichia coli tol-pal stator protein2 tolr
92c2nuxB_



not modelled 18.9 12
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
93c5v96A_



not modelled 18.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:s-adenosyl-l-homocysteine hydrolase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 naegleria fowleri with bound nad and adenosine
94c3ktcB_



not modelled 18.6 11
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution
95c5j67C_



not modelled 18.5 20
PDB header:membrane protein
Chain: C: PDB Molecule:astrotactin-2;
PDBTitle: structure of astrotactin-2, a conserved vertebrate-specific and2 perforin-like membrane protein involved in neuronal development
96c5ujeA_



not modelled 18.5 23
PDB header:gene regulation
Chain: A: PDB Molecule:sbni protein;
PDBTitle: sbni with c-terminal truncation from staphylococcus aureus
97c5kivA_



not modelled 18.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:protein-adp-ribose hydrolase;
PDBTitle: crystal structure of saumacro (sav0325)
98c3vniC_



not modelled 18.0 12
PDB header:isomerase
Chain: C: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structures of d-psicose 3-epimerase from clostridium2 cellulolyticum h10 and its complex with ketohexose sugars
99c5hm8C_



not modelled 17.5 12
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: 2.85 angstrom crystal structure of s-adenosylhomocysteinase from2 cryptosporidium parvum in complex with adenosine and nad.

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