Phyre 2 Results for RVBD1091_(PE_PGRS22)_1216474

Email	mdejesus@rockefeller.edu
Description	RVBD1091_(PE_PGRS22)_1216474_1219035
Date	Wed Jul 31 22:05:17 BST 2019
Unique Job ID	e9cd489d3732a1c7
Sequence	MSFVIAAPEA ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:51.288 Y:48.925 Z:2851.111

Model (left) based on template c1ygvA_

Top template information

PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Confidence and coverage

Confidence:

100.0%

Coverage:

98%

836 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

Warning: 92% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S F V I A A P E A L V A V A S D L A G I G S A L A E A N A A A L A P T T A L L A A G A D E V S A A I A A L F G A H G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ?
? ? ? ? ? ? ? ? ? ?
? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence A Y Q T V S A Q A S A F H A Q F V Q A L T G G G G A Y A A A E A A N V S A A Q S T D Q R L L D L I N G P T Q A L L G R P

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence L I G D G A N G G P G Q D G G P G G L L Y G N G G N G G T S T T A G V A G G N G G A A G L I G N G G A G G G G G A G A A

Secondary structure

SS confidence

Disorder ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G G N G G A G G W L Y G N G G A G G A G G T S V I P G V A G G N G G A G G S A G L W G T G G A G G D G G N G R S G P V N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence V A G S A G G N G G A G G A A G L F G D A G A G G N G G K G G A G G A A F S I N F T A G D G G A G G A G G S G G H A L L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence W G A G G A G G N G G S G G T G G A G G S T A G A G G N G G A G G G G G T G G L L F G N G G A G G H G A A A G N G L A A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence G N G V S S S G G G G A G G T G G A G G D G G A G G A G G N A R L W G V G G A G G A G G D G G A G G A G G K G G S G L S

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence G N A N G G A G G D S G R G G T G G A G G E G G A A G L L V G T G G H G G D G G A G G A A V K G G D G G A A A G T G I A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence G A G G R G G A G G S G G S G G D G G G G A A G P A G W L F G D G G A G G N G G A A A A G G A G G Q A G G G G G N G G N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . . . 560 . . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600

Sequence G G N G G N G G N G G N G A T G G W L Y G N G G A G G Q G A T A G A G G A G A N G V S S T N G G G T G G N G G I G G T G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660

Sequence G S G G A G G N A G L L G V G G A G G H G A S G G A G D R G G A G G T G F I S S D G G A G G D G G D G G N G G A G G T G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . . . . . . 710 . . . . . . . . . 720

Sequence G L L F G A G G N G G P G G S G G A A D I G G N G G A G N G G G T D G N G G N G G S G G G A G S G G D G G G A G G N G A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770 . . . . . . . . . 780

Sequence W L F G N G G A G G G G G K G G N G A G G G L G G G S F G L P G L N G S G G D G G D G G N G A P G G V L Y G N G G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence Q G S S G G I G G P G A T G G A G G K G G D G G D A Q L I G D G G N G G N G G A G G T G G T P G P G G P G G S G G L G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 850 . . .

Sequence L L F G Q T G T A G V S P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 92%)

Alpha helix ( 10%)

Beta strand ( 0%)

Domain analysis [Show]

Rank Aligned region

PDB 1ygv chain A

3D model

Region: 16 - 852
Aligned: 836
Modelled: 837
Confidence: 100.0%
Identity: 24%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 3hqv chain B

3D model

Region: 7 - 851
Aligned: 839
Modelled: 845
Confidence: 99.8%
Identity: 27%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 1y0f chain B

3D model

Region: 32 - 852
Aligned: 811
Modelled: 819
Confidence: 99.8%
Identity: 26%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 2qub chain G

3D model

Region: 1 - 276
Aligned: 276
Modelled: 276
Confidence: 99.1%
Identity: 12%
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Phyre2

PDB 5xfs chain A

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 99.1%
Identity: 54%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 2g38 chain A

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 99.1%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 99.1%
Identity: 30%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 2zj6 chain A

Region: 6 - 252
Aligned: 245
Modelled: 247
Confidence: 99.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

PDB 1k7q chain A

3D model

Region: 720 - 840
Aligned: 120
Modelled: 121
Confidence: 98.6%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant

Phyre2

PDB 1kap chain P domain 1

Region: 719 - 840
Aligned: 122
Modelled: 122
Confidence: 98.3%
Identity: 16%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2ml3 chain A

3D model

Region: 756 - 827
Aligned: 72
Modelled: 72
Confidence: 98.2%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 2ml2 chain A

3D model

Region: 757 - 827
Aligned: 71
Modelled: 71
Confidence: 98.0%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 1k7i chain A domain 1

3D model

Region: 756 - 829
Aligned: 74
Modelled: 74
Confidence: 98.0%
Identity: 24%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 3bog chain B

Region: 760 - 839
Aligned: 79
Modelled: 80
Confidence: 97.9%
Identity: 38%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3bog chain A

3D model

Region: 760 - 839
Aligned: 79
Modelled: 80
Confidence: 97.9%
Identity: 38%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 1sat chain A

3D model

Region: 720 - 837
Aligned: 118
Modelled: 118
Confidence: 97.9%
Identity: 18%
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens

Phyre2

PDB 2agm chain A

3D model

Region: 777 - 838
Aligned: 62
Modelled: 62
Confidence: 97.8%
Identity: 29%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4

Phyre2

PDB 2pne chain A

3D model

Region: 760 - 839
Aligned: 80
Modelled: 80
Confidence: 97.8%
Identity: 38%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 760 - 839
Aligned: 80
Modelled: 80
Confidence: 97.7%
Identity: 38%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3boi chain A

3D model

Region: 760 - 839
Aligned: 80
Modelled: 80
Confidence: 97.7%
Identity: 38%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

1
c1ygvA_

2
c3hqvB_

3
c1y0fB_

4
c2qubG_

5
c5xfsA_

6
c2g38A_

7
d2g38a1

8
c2zj6A_

9
c1k7qA_

10
d1kapp1

11
c2ml3A_

12
c2ml2A_

13
d1k7ia1

14
c3bogB_

15
c3bogA_

16
c1satA_

17
c2agmA_

18
c2pneA_

19
c3boiB_

20
c3boiA_

21

22

23

24

25

26

27

28

29

30

31

32