Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1094_(desA2)_1221964_1222791
DateWed Jul 31 22:05:17 BST 2019
Unique Job ID4ab1798e81ce3ee9
SequenceMAQKPVADAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.495 Y:63.368 Z:56.607
Model (left) based on template d1afra_
Top template information
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
Confidence and coverage
Confidence:100.0% Coverage: 97%
267 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1afra_



100.0 21
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
2d1za0a1



100.0 100
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
3c5hyhA_



98.5 12
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: cmli (chemically reduced state), arylamine oxygenase of2 chloramphenicol biosynthetic pathway
4c3hf1B_



98.5 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b;
PDBTitle: crystal structure of human p53r2
5c1h0oA_



98.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state
6d1w68a_



98.4 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
7c2p1iA_



98.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, small chain;
PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671)
8d1uzra_



98.4 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
9c2o1zA_



98.3 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase subunit r2;
PDBTitle: plasmodium vivax ribonucleotide reductase subunit r2 (pv086155)
10c3chtA_



98.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
11d1smsa_



98.3 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
12d1jk0b_



98.3 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
13d1oquc_



98.2 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
14c1r2fB_



98.2 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein (ribonucleotide reductase r2);
PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium
15c2rccC_



98.2 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution
16c2vuxB_



98.2 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b;
PDBTitle: human ribonucleotide reductase, subunit m2 b
17c4bmtB_



98.1 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
18d3dhza1



98.1 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
19c1smqD_



98.1 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain
PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae
20c4n83F_



98.1 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: x-ray crystal structure of streptococcus sanguinis dimanganese(ii)-2 nrdf
21d1jk0a_



not modelled 98.0 19
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
22d1r2fa_



not modelled 98.0 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
23c4a58B_



not modelled 98.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase small chain;
PDBTitle: crystal structure of a monometal state of the2 ribonucleotide-reductase small subunit from epstein-barr virus in3 orthorhombic space group
24c6qrzA_



not modelled 98.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of r2-like ligand-binding oxidase from sulfolobus2 acidocaldarius solved by 3d micro-crystal electron diffraction
25d1mxra_



not modelled 97.9 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
26c3ee4A_



not modelled 97.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase;
PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis
27d2oh3a1



not modelled 97.9 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:AMB4284-like
28c6gp2A_



not modelled 97.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain;
PDBTitle: ribonucleotide reductase class ie r2 from mesoplasma florum, dopa-2 active form
29c4hr0A_



not modelled 97.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonuleotide reductase small subunit;
PDBTitle: r2-like ligand-binding oxidase with aerobically reconstituted metal2 cofactor
30c6d9fA_



not modelled 97.8 15
PDB header:lyase
Chain: A: PDB Molecule:putative vlmb homolog;
PDBTitle: protein 60 with aldehyde deformylating oxidase activity from2 kitasatospora setae
31c4r42B_



not modelled 97.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:alr3090 protein;
PDBTitle: crystal structure of katb, a manganese catalase from anabaena pcc7120
32d2fzfa1



not modelled 97.7 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
33c5xx9A_



not modelled 97.7 12
PDB header:metal transport
Chain: A: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of bacterioferritin
34c1syyA_



not modelled 97.7 14
PDB header:replication,oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain;
PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis
35d1syya_



not modelled 97.7 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
36d1vjxa_



not modelled 97.6 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
37c4dr0A_



not modelled 97.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of bacillus subtilis dimanganese(ii) nrdf
38c6cwqA_



not modelled 97.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase;
PDBTitle: x-ray crystal structure of flavobacterium johnsoniae dimanganese(ii)2 ribonucleotide reductase beta subunit (as-isolated)
39c5uxgB_



not modelled 97.5 18
PDB header:lyase
Chain: B: PDB Molecule:aldehyde deformylating oxygenase;
PDBTitle: protein 84 with aldehyde deformylating oxygenase activity from2 sulfolobus tokodaii (monoclinic)
40d1jgca_



not modelled 97.4 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
41c5n5eM_



not modelled 97.4 17
PDB header:oxidoreductase
Chain: M: PDB Molecule:pfc_05175;
PDBTitle: crystal structure of encapsulated ferritin domain from pyrococcus2 furiosus pfc_05175
42c4di0B_



not modelled 97.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: the structure of rubrerythrin from burkholderia pseudomallei
43c3bknB_



not modelled 97.3 15
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: the structure of mycobacterial bacterioferritin
44c2vzbA_



not modelled 97.3 13
PDB header:metal transport
Chain: A: PDB Molecule:putative bacterioferritin-related protein;
PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis
45c4mudA_



not modelled 97.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ring oxydation complex/ phenylacetic acid degradation
PDBTitle: crystal structure of a ring oxydation complex/ phenylacetic acid2 degradation-like protein (sso1313) from sulfolobus solfataricus p2 at3 2.43 a resolution
46c1yfdA_



not modelled 97.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta chain;
PDBTitle: crystal structure of the y122h mutant of ribonucleotide reductase r22 protein from e. coli
47c5olkD_



not modelled 97.1 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, beta subunit 1;
PDBTitle: crystal structure of the atp-cone-containing nrdb from2 leeuwenhoekiella blandensis
48c3e6sD_



not modelled 97.1 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:ferritin;
PDBTitle: crystal structure of ferritin soaked with iron from pseudo-nitzschia2 multiseries
49c3q4nA_



not modelled 97.1 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mj0754;
PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661
50c4am4B_



not modelled 97.0 18
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: bacterioferritin from blastochloris viridis
51c3qhbA_



not modelled 97.0 18
PDB header:metal transport
Chain: A: PDB Molecule:symerythrin;
PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa
52d2fkza1



not modelled 97.0 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
53c2clbP_



not modelled 96.9 15
PDB header:metal binding protein
Chain: P: PDB Molecule:dps-like protein;
PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly
54d2htna1



not modelled 96.9 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
55d2inca1



not modelled 96.9 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
56d1lkoa1



not modelled 96.8 21
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
57d1vlga_



not modelled 96.7 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
58c3gvyC_



not modelled 96.7 13
PDB header:metal binding protein
Chain: C: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of bacterioferritin from r.sphaeroides
59d1nf4a_



not modelled 96.7 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
60c3dhiA_



not modelled 96.6 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit;
PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein
61d1krqa_



not modelled 96.5 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
62d1j30a_



not modelled 96.5 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
63c5ouwA_



not modelled 96.5 11
PDB header:metal binding protein
Chain: A: PDB Molecule:ferritin;
PDBTitle: metal free structure of synftn
64d1jkva_



not modelled 96.4 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
65c3qd8M_



not modelled 96.4 21
PDB header:metal binding protein
Chain: M: PDB Molecule:probable bacterioferritin bfrb;
PDBTitle: crystal structure of mycobacterium tuberculosis bfrb
66c3r2rA_



not modelled 96.4 17
PDB header:metal binding protein
Chain: A: PDB Molecule:bacterioferritin;
PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0)
67d1nnqa1



not modelled 96.3 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
68d1mtyd_



not modelled 96.3 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
69c2ib0A_



not modelled 96.2 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical alanine rich protein;
PDBTitle: crystal structure of a conserved hypothetical protein, rv2844, from2 mycobacterium tuberculosis
70d2ib0a1



not modelled 96.2 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Rv2844-like
71d1yv1a1



not modelled 96.1 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
72c5da5R_



not modelled 95.9 9
PDB header:oxidoreductase
Chain: R: PDB Molecule:rru_a0973;
PDBTitle: crystal structure of rhodospirillum rubrum rru_a0973
73d1s3qa1



not modelled 95.9 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
74c2qqyA_



not modelled 95.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sigma b operon;
PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames
75c5wpnA_



not modelled 95.7 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: zn-bound structure of chaetopterus variopedatus ferritin
76c1dvbA_



not modelled 95.7 19
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
77c5n5fC_



not modelled 95.7 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:encapsulated ferritin;
PDBTitle: crystal structure of haliangium ochraceum encapsulated ferritin
78c3bvkC_



not modelled 95.7 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:ferritin;
PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin
79c3fvbB_



not modelled 95.6 12
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of ferritin (bacterioferritin) from brucella2 melitensis
80d1yuza1



not modelled 95.5 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
81c4cmyN_



not modelled 95.5 15
PDB header:metal transport
Chain: N: PDB Molecule:ferritin;
PDBTitle: chlorobium tepidum ferritin
82d1lb3a_



not modelled 95.2 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
83d1zpya1



not modelled 95.2 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:half-ferritin
84d1rcda_



not modelled 95.2 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
85d1r03a_



not modelled 95.1 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
86d2ceia1



not modelled 95.0 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
87d1euma_



not modelled 94.7 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
88c3qz3A_



not modelled 94.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961
89c6a4uD_



not modelled 94.5 13
PDB header:metal binding protein
Chain: D: PDB Molecule:ferritin;
PDBTitle: the first crystal structure of crustacean ferritin that is a hybrid2 type of h and l ferritin
90d2za7a1



not modelled 94.2 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
91c1yuzB_



not modelled 94.1 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
92d1mfra_



not modelled 94.0 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
93c2jd8C_



not modelled 93.9 15
PDB header:metal transport
Chain: C: PDB Molecule:ferritin homolog;
PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus
94d1mhyd_



not modelled 93.7 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
95c3pm5B_



not modelled 92.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:benzoyl-coa oxygenase component b;
PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa
96c2hr5B_



not modelled 92.7 12
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
97c3pw1A_



not modelled 91.8 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa;
PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa
98c3vnxA_



not modelled 91.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: crystal structure of ferritin from multicellular green algae, ulva2 pertusa.
99d1z6om1



not modelled 89.2 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
100d2cwla1



not modelled 87.0 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
101d1otka_



not modelled 85.5 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
102c3oghB_



not modelled 83.8 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycie;
PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins
103c2innA_



not modelled 79.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol hydroxylase component phn;
PDBTitle: structure of the phenol hydroxyalse-regulatory protein complex
104c3kwoA_



not modelled 75.3 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative bacterioferritin;
PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni
105d2incb1



not modelled 70.7 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
106c3dhgB_



not modelled 70.0 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit;
PDBTitle: crystal structure of toluene 4-monoxygenase hydroxylase
107d2fjca1



not modelled 69.9 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
108d2itba1



not modelled 69.4 20
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
109c5ux1D_



not modelled 65.2 17
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
110d1ji5a_



not modelled 61.7 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
111c3a9qR_



not modelled 59.4 12
PDB header:oxidoreductase
Chain: R: PDB Molecule:
PDBTitle: crystal structure analysis of e173a variant of the soybean2 ferritin sfer4
112d1o9ra_



not modelled 58.7 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
113c2c41K_



not modelled 58.1 12
PDB header:iron-binding/oxidation protein
Chain: K: PDB Molecule:dps family dna-binding stress response protein;
PDBTitle: x-ray structure of dps from thermosynechococcus elongatus
114d1dpsa_



not modelled 57.6 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
115c2xgwA_



not modelled 55.2 5
PDB header:metal binding protein
Chain: A: PDB Molecule:peroxide resistance protein;
PDBTitle: zinc-bound crystal structure of streptococcus pyogenes dpr
116c2chpC_



not modelled 49.6 6
PDB header:dna binding protein
Chain: C: PDB Molecule:metalloregulation dna-binding stress protein;
PDBTitle: crystal structure of the dodecameric ferritin mrga from b. subtilis2 168
117c2wlaA_



not modelled 49.2 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:dps-like peroxide resistance protein;
PDBTitle: streptococcus pyogenes dpr
118d1vela_



not modelled 48.0 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
119d2yw6a1



not modelled 43.4 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
120c2c6rA_



not modelled 43.4 7
PDB header:dna-binding protein
Chain: A: PDB Molecule:dna-binding stress response protein, dps family;
PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans

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