Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1097c_(-)_1225268_1226149
DateWed Jul 31 22:05:17 BST 2019
Unique Job ID043fbb0e9eba65b3
SequenceMTVPPAGPYG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.850 Y:40.785 Z:57.957
Model (left) based on template c4nl6C_
Top template information
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
Confidence and coverage
Confidence: 86.1% Coverage: 22%
65 residues ( 22% of your sequence) have been modelled with 86.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 67% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4nl6C_
86.1 22
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
2c3d9xA_
39.6 8
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesin a;
PDBTitle: structure of the head of the bartonella adhesin bada
3c4lgoC_
37.4 4
PDB header:cell adhesion
Chain: C: PDB Molecule:vompd;
PDBTitle: crystal structure of n-terminal domain 1 of vompd from bartonella2 quintana
4c5do7B_
31.1 15
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 8;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
5d2vnud3
30.1 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
6d1xhja_
20.7 26
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
7c4ol4A_
20.3 13
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
8c5do7A_
20.0 13
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family g member 5;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
9c5nj3B_
16.9 34
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: complete structure
10c1qysA_
16.8 30
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
11c2jvfA_
16.4 28
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
12c4wyqB_
15.5 22
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the dicer-trbp interface
13c2mblA_
15.4 36
PDB header:de novo protein
Chain: A: PDB Molecule:top7 fold protein top7m13;
PDBTitle: solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
14d1trra_
15.0 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
15d1jhga_
12.6 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
16c2yo1A_
12.5 0
PDB header:membrane protein
Chain: A: PDB Molecule:general control protein gcn4, putative inner membrane
PDBTitle: salmonella enterica sada 1049-1304 fused to gcn4 adaptors (sadak9-2 cfii)
17c3wprA_
12.1 4
PDB header:cell adhesion
Chain: A: PDB Molecule:trimeric autotransporter adhesin;
PDBTitle: acinetobacter sp. tol 5 ataa n-terminal half of c-terminal stalk fused2 to gcn4 adaptors (cstalkn)
18c2gjhA_
11.5 32
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
19c3pr7A_
10.8 4
PDB header:membrane protein
Chain: A: PDB Molecule:uspa1;
PDBTitle: multi-functional and mechanosensitive receptor binding activity of the2 moraxella catarrhalis adhesin uspa1
20c3ah9C_
10.4 56
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
21c3ah9B_
not modelled 10.4 56
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
22c3ah9E_
not modelled 10.4 56
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
23c4usxB_
not modelled 9.6 5
PDB header:transport protein
Chain: B: PDB Molecule:trimeric autotransporter adhesin;
PDBTitle: the structure of the c-terminal yada-like domain of2 bpsl2063 from burkholderia pseudomallei
24c3wp8A_
not modelled 9.5 0
PDB header:cell adhesion
Chain: A: PDB Molecule:trimeric autotransporter adhesin;
PDBTitle: acinetobacter sp. tol 5 ataa c-terminal ylhead fused to gcn4 adaptors2 (chead)
25d1veha_
not modelled 8.3 18
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
26c2cuoA_
not modelled 8.1 54
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
27c2cuoD_
not modelled 8.1 54
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
28c2cuoB_
not modelled 8.1 54
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
29c2cuoE_
not modelled 8.1 54
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
30c4fasD_
not modelled 7.5 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:ne1300;
PDBTitle: complex crystal structure of hydroxylamine oxidoreductase and ne13002 from nitrosomonas europaea
31c3frwF_
not modelled 7.4 43
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
32c2cuoC_
not modelled 7.2 54
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
33c2cuoF_
not modelled 7.2 54
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
34c1p9hA_
not modelled 7.1 0
PDB header:cell adhesion
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of the collagen-binding domain of yersinia adhesin2 yada
35d1p9ha_
not modelled 7.1 0
Fold:Single-stranded left-handed beta-helix
Superfamily:Adhesin YadA, collagen-binding domain
Family:Adhesin YadA, collagen-binding domain
36c5u59A_
not modelled 7.0 45
PDB header:de novo protein
Chain: A: PDB Molecule:designed dimeric coiled coil peptide with two terpyridine
PDBTitle: coiled coil peptide metal coordination framework: dimer fold grown2 with citrate
37c5u5aA_
not modelled 6.9 45
PDB header:de novo protein
Chain: A: PDB Molecule:designed dimeric coiled coil peptide with two terpyridine
PDBTitle: coiled coil peptide metal coordination framework: dimer fold
38c3ah9A_
not modelled 6.9 54
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
39d2pi2e1
not modelled 6.8 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
40c4dznC_
not modelled 6.4 45
PDB header:de novo protein
Chain: C: PDB Molecule:coiled-coil peptide cc-pil;
PDBTitle: a de novo designed coiled coil cc-pil
41c4dznA_
not modelled 6.4 45
PDB header:de novo protein
Chain: A: PDB Molecule:coiled-coil peptide cc-pil;
PDBTitle: a de novo designed coiled coil cc-pil
42c4dznB_
not modelled 6.4 45
PDB header:de novo protein
Chain: B: PDB Molecule:coiled-coil peptide cc-pil;
PDBTitle: a de novo designed coiled coil cc-pil
43c3ah9F_
not modelled 6.2 54
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
44c3korD_
not modelled 6.0 43
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
45c2pqaB_
not modelled 5.9 18
PDB header:replication
Chain: B: PDB Molecule:replication protein a 14 kda subunit;
PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
46c5ol2D_
not modelled 5.6 22
PDB header:flavoprotein
Chain: D: PDB Molecule:electron transfer flavoprotein large subunit;
PDBTitle: the electron transferring flavoprotein/butyryl-coa dehydrogenase2 complex from clostridium difficile
47c2jnvA_
not modelled 5.5 23
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 1, chloroplast;
PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa
48c3la9A_
not modelled 5.5 13
PDB header:transport protein
Chain: A: PDB Molecule:haemagglutinin family protein;
PDBTitle: crystal structure of the trimeric autotransporter adhesin head domain2 bpaa from burkholderia pseudomallei, iodide phased
49d1q0qa1
not modelled 5.3 20
Fold:Left-handed superhelix
Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
50c4x8wE_
not modelled 5.3 23
PDB header:gene regulation
Chain: E: PDB Molecule:loquacious, isoform b;
PDBTitle: dsrbd3 of loquacious
51c2z51A_
not modelled 5.1 26
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 2, chloroplast;
PDBTitle: crystal structure of arabidopsis cnfu involved in iron-sulfur cluster2 biosynthesis

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below