Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1098c_(fumC)_1226146_1227570
DateWed Jul 31 22:05:17 BST 2019
Unique Job ID4a8fb7ac563902e2
SequenceMAVDADSANY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.767 Y:94.773 Z:78.295
Model (left) based on template c6n1mA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of fumarate hydratase class ii from legionella2 pneumophila philadelphia 1
Confidence and coverage
Confidence:100.0% Coverage: 96%
455 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6n1mA_



100.0 47
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of fumarate hydratase class ii from legionella2 pneumophila philadelphia 1
2c3gtdA_



100.0 49
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
3c3no9C_



100.0 99
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis
4c1yfmA_



100.0 50
PDB header:lyase
Chain: A: PDB Molecule:fumarase;
PDBTitle: recombinant yeast fumarase
5d1yfma_



100.0 50
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
6c3e04A_



100.0 51
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
7d1vdka_



100.0 51
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
8d1j3ua_



100.0 44
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
9c4hgvD_



100.0 47
PDB header:lyase
Chain: D: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
10d1jswa_



100.0 42
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
11d1fuoa_



100.0 50
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
12c3ocfB_



100.0 46
PDB header:lyase
Chain: B: PDB Molecule:fumarate lyase:delta crystallin;
PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form
13c3e04C_



100.0 53
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
14c3gtdB_



100.0 50
PDB header:lyase
Chain: B: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
15c4hgvC_



100.0 48
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
16d1jswc_



100.0 43
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
17c3r6yG_



100.0 46
PDB header:lyase
Chain: G: PDB Molecule:aspartase;
PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1
18c5xnzA_



100.0 23
PDB header:lyase
Chain: A: PDB Molecule:cred;
PDBTitle: crystal structure of cred complex with fumarate
19d1re5a_



100.0 24
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
20c2pfmA_



100.0 21
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis
21d1q5na_



not modelled 100.0 23
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
22d1c3ca_



not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
23d1tj7a_



not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
24c2e9fC_



not modelled 100.0 22
PDB header:lyase
Chain: C: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine
25c6g3eA_



not modelled 100.0 20
PDB header:lyase
Chain: A: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of edds lyase in complex with formate
26c6igaB_



not modelled 100.0 23
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
27d1hy0a_



not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
28d1tjva_



not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
29d1k62a_



not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
30d1i0aa_



not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
31c5vkwB_



not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase ade13 from candida2 albicans
32c4eeiA_



not modelled 100.0 17
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from francisella2 tularensis complexed with amp and succinate
33c3c8tA_



not modelled 100.0 20
PDB header:lyase
Chain: A: PDB Molecule:fumarate lyase;
PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1
34c4nleB_



not modelled 100.0 17
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of apo adenylosuccinate lyase from mycobacterium2 smegmatis
35c4efcA_



not modelled 100.0 17
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from trypanosoma brucei,2 tb427tmp.160.5560
36c3bhgA_



not modelled 100.0 14
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila
37d1dofa_



not modelled 100.0 20
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
38c2vd6B_



not modelled 100.0 17
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate.
39c2ptsA_



not modelled 100.0 15
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase
40c1yisA_



not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase
41c2qgaC_



not modelled 100.0 16
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
42c5eyvB_



not modelled 100.0 18
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from schistosoma mansoni2 in apo form.
43c4mx2C_



not modelled 100.0 16
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from leishmania donovani
44c2fenA_



not modelled 100.0 22
PDB header:isomerase
Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme;
PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2
45d1f1oa_



not modelled 100.0 20
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
46c2xgvA_



not modelled 48.4 18
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
47c5tv7A_



not modelled 35.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidoglycan-binding/hydrolysing protein;
PDBTitle: 2.05 angstrom resolution crystal structure of peptidoglycan-binding2 protein from clostridioides difficile in complex with glutamine3 hydroxamate.
48c5bmqA_



not modelled 28.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of l,d-transpeptidase (yku) from stackebrandtia2 nassauensis
49d1gkma_



not modelled 25.3 24
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
50d1lbua1



not modelled 25.1 21
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
51c3bkhA_



not modelled 22.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
52c6nyyA_



not modelled 20.1 13
PDB header:translocase
Chain: A: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
53c4bolA_



not modelled 19.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:ampdh2;
PDBTitle: crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
54c4xxtA_



not modelled 19.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:fusion of predicted zn-dependent amidase/peptidase (cell
PDBTitle: crystal structure of fused zn-dependent2 amidase/peptidase/peptodoglycan-binding domain-containing protein3 from clostridium acetobutylicum atcc 824
55d2p1ra1



not modelled 18.6 12
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
56c4btpI_



not modelled 16.9 29
PDB header:viral protein
Chain: I: PDB Molecule:p1;
PDBTitle: structure of the capsid protein p1 of the bacteriophage phi8
57c1byvA_



not modelled 15.0 20
PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (calcitonin);
PDBTitle: glycosylated eel calcitonin
58c5cx2C_



not modelled 14.1 15
PDB header:structural protein
Chain: C: PDB Molecule:coronin;
PDBTitle: structure of coiled coil domain of leishmania donovani coronin
59c2ctoA_



not modelled 14.0 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
60c4g54A_



not modelled 14.0 17
PDB header:peptidoglycan-binding protein
Chain: A: PDB Molecule:general secretion pathway protein;
PDBTitle: crystal structure of a periplasmic domain of the epsab fusion protein2 of the vibrio vulnificus type ii secretion system
61c4lpqA_



not modelled 13.9 30
PDB header:transferase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894
62d2ce7a1



not modelled 13.7 21
Fold:FtsH protease domain-like
Superfamily:FtsH protease domain-like
Family:FtsH protease domain-like
63c3bbnC_



not modelled 13.7 50
PDB header:ribosome
Chain: C: PDB Molecule:ribosomal protein s3;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
64c3lq9B_



not modelled 13.4 11
PDB header:signaling protein
Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein;
PDBTitle: crystal structure of human redd1, a hypoxia-induced regulator of mtor
65c2di4B_



not modelled 13.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:cell division protein ftsh homolog;
PDBTitle: crystal structure of the ftsh protease domain
66d2bona1



not modelled 12.9 14
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
67c5zdnA_



not modelled 12.4 31
PDB header:hydrolase
Chain: A: PDB Molecule:fomd;
PDBTitle: the complex structure of fomd with cdp
68d1nvta2



not modelled 11.5 29
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
69d2joka1



not modelled 11.2 24
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
70d1e0ea_



not modelled 10.8 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
71d1k6ya1



not modelled 10.7 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
72d1w27a_



not modelled 10.6 22
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
73d1wjfa_



not modelled 10.5 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
74d2di4a1



not modelled 10.5 18
Fold:FtsH protease domain-like
Superfamily:FtsH protease domain-like
Family:FtsH protease domain-like
75c2ev9B_



not modelled 9.5 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate
76c3j3bT_



not modelled 9.4 26
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l21;
PDBTitle: structure of the human 60s ribosomal proteins
77c1lbuA_



not modelled 9.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase;
PDBTitle: hydrolase metallo (zn) dd-peptidase
78c3fbtB_



not modelled 8.9 20
PDB header:oxidoreductase, lyase
Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase fusion
PDBTitle: crystal structure of a chorismate mutase/shikimate 5-dehydrogenase2 fusion protein from clostridium acetobutylicum
79c3iz5U_



not modelled 8.9 15
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
80c2digA_



not modelled 8.9 56
PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
81c3exmA_



not modelled 8.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
82c5dzsA_



not modelled 8.7 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase (nadp(+));
PDBTitle: 1.5 angstrom crystal structure of shikimate dehydrogenase 1 from2 peptoclostridium difficile.
83c5nm7A_



not modelled 8.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan-binding domain 1;
PDBTitle: crystal structure of burkholderia ap3 phage endolysin
84d1npya2



not modelled 8.7 50
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
85d2pxrc1



not modelled 8.5 25
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
86c6fxyA_



not modelled 8.3 39
PDB header:transferase
Chain: A: PDB Molecule:procollagen-lysine,2-oxoglutarate 5-dioxygenase 3;
PDBTitle: crystal structure of full-length human lysyl hydroxylase lh3 -2 cocrystal with fe2+, mn2+, udp-gal - structure from long-wavelength3 s-sad
87c5cx2B_



not modelled 7.7 16
PDB header:structural protein
Chain: B: PDB Molecule:coronin;
PDBTitle: structure of coiled coil domain of leishmania donovani coronin
88d2b0ja1



not modelled 7.6 28
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HMD dimerization domain-like
89d1vi2a2



not modelled 7.4 14
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
90c3zf7U_



not modelled 7.2 15
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21e, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
91c6nyyC_



not modelled 7.2 12
PDB header:translocase
Chain: C: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
92c3izcU_



not modelled 7.1 22
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
93d1p77a2



not modelled 7.1 33
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
94c2k2tA_



not modelled 7.0 22
PDB header:cell adhesion
Chain: A: PDB Molecule:micronemal protein 6;
PDBTitle: epidermal growth factor-like domain 2 from toxoplasma2 gondii microneme protein 6
95c2v1nA_



not modelled 7.0 25
PDB header:nuclear protein
Chain: A: PDB Molecule:protein kin homolog;
PDBTitle: solution structure of the region 51-160 of human kin172 reveals a winged helix fold
96c2pmzL_



not modelled 7.0 14
PDB header:translation, transferase
Chain: L: PDB Molecule:dna-directed rna polymerase subunit l;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
97c3j38V_



not modelled 7.0 17
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
98d1u5ta1



not modelled 6.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
99c1wjvA_



not modelled 6.7 44
PDB header:dna binding protein
Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar;
PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar

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