Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1100_(-)_1228688_1229389
DateWed Jul 31 22:05:18 BST 2019
Unique Job IDbe61ca0d09fabc7c
SequenceMVGDCPRSRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.638 Y:32.225 Z:50.379
Model (left) based on template d1tu1a_
Top template information
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
Confidence and coverage
Confidence: 77.0% Coverage: 48%
111 residues ( 48% of your sequence) have been modelled with 77.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1tu1a_
77.0 15
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
2c3lydA_
63.4 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans
3c2jpwA_
53.6 54
PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, cardiac muscle;
PDBTitle: solution structure of the bisphosphorylated cardiac2 specific n-extension of cardiac troponin i
4d1ig4a_
44.4 44
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
5d1oa3a_
39.0 53
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
6d1oa2a_
37.7 53
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
7d2bw8a1
34.8 29
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
8c1h0bA_
34.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: endoglucanase cel12a from rhodothermus marinus
9d1oa4a_
34.6 53
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
10c5m2dB_
34.4 41
PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase-like protein;
PDBTitle: crystal structure 4ac endoglucanase-like protein from acremonium2 chrysogenum
11c3mk7F_
34.4 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
12c3vlbB_
33.9 28
PDB header:plant protein/hydrolase
Chain: B: PDB Molecule:xyloglucan-specific endo-beta-1,4-glucanase a;
PDBTitle: crystal structure of xeg-edgp
13d2nlra_
32.7 53
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
14c4ol4A_
32.4 14
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
15c4nprA_
32.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:xyloglucan-specific endo-beta-1,4-glucanase gh12;
PDBTitle: crystal structure of the family 12 xyloglucanase from aspergillus2 niveus
16d3buxb3
32.0 20
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
17c5gm5G_
30.8 29
PDB header:hydrolase/inhibitor
Chain: G: PDB Molecule:endoglucanase-1;
PDBTitle: crystal structure of fi-cmcase from aspergillus aculeatus f-50 in2 complex with cellobiose
18d1olra_
29.4 24
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
19d1ks5a_
29.3 41
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
20d1uj4a2
28.1 18
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
21c2k5hA_
not modelled 26.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a
22c2jemB_
not modelled 25.6 44
PDB header:hydrolase
Chain: B: PDB Molecule:endo-beta-1,4-glucanase;
PDBTitle: native family 12 xyloglucanase from bacillus licheniformis
23c2ky8A_
not modelled 25.3 36
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
24c3cp0A_
not modelled 24.7 18
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane
PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum
25c3nctC_
not modelled 24.1 20
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
26c3op0B_
not modelled 21.7 27
PDB header:signaling protein/signaling protein regu
Chain: B: PDB Molecule:signal transduction protein cbl-c;
PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide
27d2gu3a1
not modelled 20.9 24
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:PepSY-like
28d1lk5a2
not modelled 20.5 15
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
29d1m0sa2
not modelled 20.3 18
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
30c6eepA_
not modelled 20.1 15
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase from legionella2 pneumophila
31d2exda1
not modelled 20.1 18
Fold:OB-fold
Superfamily:NfeD domain-like
Family:NfeD domain-like
32c1m57H_
not modelled 19.5 17
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
33c5uf2A_
not modelled 19.3 13
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5 phosphate isomerase a from neisseria2 gonorrhoeae
34c6bk5A_
not modelled 17.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin ligase cbl;
PDBTitle: inactive choanoflagellate e3 ubiquitin ligase cbl tkb
35d1o8ba2
not modelled 16.1 13
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
36c4x84C_
not modelled 15.5 13
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
37c3wwvA_
not modelled 15.4 20
PDB header:unknown function
Chain: A: PDB Molecule:stomatin operon partner protein;
PDBTitle: c-terminal domain of stomatin operon partner protein 1510-c from2 pyrococcus horikoshii
38c2pjmA_
not modelled 14.6 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
39c3fxdD_
not modelled 14.4 29
PDB header:unknown function
Chain: D: PDB Molecule:protein icmr;
PDBTitle: crystal structure of interacting domains of icmr and icmq
40c1uj6A_
not modelled 14.3 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate
41c1m0sA_
not modelled 13.7 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
42c1lkzB_
not modelled 13.6 13
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
43c6g4wr_
not modelled 13.3 21
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
44c4gmkB_
not modelled 12.9 18
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
45d2p13a1
not modelled 12.8 22
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
46c3u7jA_
not modelled 12.3 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
47c2dwvB_
not modelled 12.1 28
PDB header:protein binding
Chain: B: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45)
48c2vt8B_
not modelled 11.7 20
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:proteasome inhibitor pi31 subunit;
PDBTitle: structure of a conserved dimerisation domain within fbox7 and pi31
49c6ghbB_
not modelled 11.4 19
PDB header:protein binding
Chain: B: PDB Molecule:upf0413 protein gk0824;
PDBTitle: crystal structure of spx in complex with yjbh (oxidized)
50c5levA_
not modelled 11.1 50
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine--dolichyl-phosphate n-
PDBTitle: crystal structure of human udp-n-acetylglucosamine-dolichyl-phosphate2 n-acetylglucosaminephosphotransferase (dpagt1) (v264g mutant)
51d1v58a2
not modelled 11.0 22
Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
52c3l7oB_
not modelled 10.8 13
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
53d1qk9a_
not modelled 10.8 30
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
54c3le4A_
not modelled 10.4 67
PDB header:nuclear protein
Chain: A: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: crystal structure of the dgcr8 dimerization domain
55d1nmva1
not modelled 10.3 40
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
56d1pina1
not modelled 9.9 50
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
57d1fftb2
not modelled 9.8 7
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
58c4p6vC_
not modelled 9.7 8
PDB header:oxidoreductase
Chain: C: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit c;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
59d1i8gb_
not modelled 9.0 50
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
60c6gtmA_
not modelled 8.9 12
PDB header:signaling protein
Chain: A: PDB Molecule:aldo-keto reductase family protein;
PDBTitle: crystal structure of smba in complex with ppgpp.
61c3kwmC_
not modelled 8.6 13
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
62c3jcuI_
not modelled 8.1 19
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
63d1f8ab1
not modelled 7.8 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
64c6gw6A_
not modelled 7.7 20
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
65c2ysgA_
not modelled 7.4 50
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
66c1wr4A_
not modelled 7.3 63
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
67d1ur3m_
not modelled 7.2 34
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
68c2cblA_
not modelled 7.1 12
PDB header:complex (proto-oncogene/peptide)
Chain: A: PDB Molecule:proto-oncogene cbl;
PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70
69c3bunB_
not modelled 7.0 12
PDB header:ligase/signaling protein
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl;
PDBTitle: crystal structure of c-cbl-tkb domain complexed with its binding motif2 in sprouty4
70d1cdwa2
not modelled 7.0 14
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
71d1rk4a2
not modelled 6.8 36
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
72c2djyA_
not modelled 6.7 42
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
73c1lk5C_
not modelled 6.7 20
PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
74c1smzA_
not modelled 6.5 67
PDB header:transport protein
Chain: A: PDB Molecule:transportan in bicellar solution with
PDBTitle: structure of transportan in phospholipid bicellar solution
75c4lkuA_
not modelled 6.3 38
PDB header:transport protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
76c4lkuB_
not modelled 6.2 38
PDB header:transport protein
Chain: B: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
77c2n8tA_
not modelled 6.2 50
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
78c2j6aA_
not modelled 5.8 21
PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
79c2zajA_
not modelled 5.8 50
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
80d2axti1
not modelled 5.8 22
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
81c3a0hi_
not modelled 5.8 22
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
82c1xmeB_
not modelled 5.8 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus
83d2e74a1
not modelled 5.7 13
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
84d2ysca1
not modelled 5.7 57
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
85c1h54B_
not modelled 5.6 33
PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
86c6d0hA_
not modelled 5.4 33
PDB header:toxin
Chain: A: PDB Molecule:part: cog5654 (res domain) toxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
87c4nooA_
not modelled 5.4 30
PDB header:immune system
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae
88d3dtub2
not modelled 5.4 17
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
89d2itka1
not modelled 5.3 57
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
90c2lb0A_
not modelled 5.3 50
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
91c2lazA_
not modelled 5.3 50
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
92c2yshA_
not modelled 5.2 44
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
93c3gr1A_
not modelled 5.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)
94c1sfsA_
not modelled 5.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: 1.07 a crystal structure of an uncharacterized b. stearothermophilus2 protein
95d1sfsa_
not modelled 5.2 20
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
96c2yscA_
not modelled 5.2 33
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below