Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1101c_(-)_1229396_1230553
DateWed Jul 31 22:05:18 BST 2019
Unique Job IDd6e731e3e228c78c
SequenceLNTEFTLTQK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.651 Y:23.381 Z:27.899
Model (left) based on template d1kkxa_
Top template information
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
Confidence and coverage
Confidence: 55.4% Coverage: 17%
65 residues ( 17% of your sequence) have been modelled with 55.4% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1kkxa_



55.4 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
2d3b60a2



44.1 11
Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
3c3qf4B_



40.6 6
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
4c5u1dB_



24.6 10
PDB header:transport protein
Chain: B: PDB Molecule:antigen peptide transporter 2;
PDBTitle: cryo-em structure of the human tap atp-binding cassette transporter
5c5c76D_



17.2 11
PDB header:transport protein
Chain: D: PDB Molecule:wlab protein;
PDBTitle: atp-driven lipid-linked oligosaccharide flippase pglk in apo-inward2 facing state (2)
6c4pl0B_



17.0 12
PDB header:transport protein
Chain: B: PDB Molecule:microcin-j25 export atp-binding/permease protein mcjd;
PDBTitle: crystal structure of the antibacterial peptide abc transporter mcjd in2 an outward occluded state
7c4yzfA_



16.9 15
PDB header:immune system
Chain: A: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the anion exchanger domain of human erythrocyte2 band 3
8c5jnqA_



15.3 15
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: mray tunicamycin complex
9d1ryua_



11.8 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
10c3rlbA_



11.1 13
PDB header:thiamine-binding protein
Chain: A: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
11c3b5wE_



8.7 10
PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
12d1ig6a_



8.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
13c3qf4A_



8.3 11
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
14c4p6vB_



8.2 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit b;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
15c2b6pA_



8.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
16c5nf2A_



8.1 10
PDB header:cell adhesion
Chain: A: PDB Molecule:minor fimbrium subunit mfa1;
PDBTitle: the fimbrial shaft protein mfa1 from porphyromonas gingivalis
17c3j2wE_



8.1 26
PDB header:virus
Chain: E: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
18c3j2wH_



8.1 26
PDB header:virus
Chain: H: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
19c3j7kF_



7.9 25
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
20c3j7jF_



7.9 25
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
21c3j8bF_



not modelled 7.9 25
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
22c3j8cF_



not modelled 7.9 25
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
23c4j72B_



not modelled 7.6 14
PDB header:transferase
Chain: B: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
24c4tkrB_



not modelled 7.6 13
PDB header:membrane protein
Chain: B: PDB Molecule:thiamine transporter thia;
PDBTitle: native-sad phasing for thit from listeria monocytogenes serovar.
25c2eqyA_



not modelled 7.6 9
PDB header:dna binding protein
Chain: A: PDB Molecule:jumonji, at rich interactive domain 1b;
PDBTitle: solution structure of the arid domain of jarid1b protein
26c2mfrA_



not modelled 7.4 9
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
27c6ithA_



not modelled 6.8 29
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
28c3wajA_



not modelled 6.7 11
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
29c6hu9t_



not modelled 6.7 15
PDB header:oxidoreductase/electron transport
Chain: T: PDB Molecule:cytochrome b-c1 complex subunit 9;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
30c6caaA_



not modelled 6.6 21
PDB header:transport protein
Chain: A: PDB Molecule:electrogenic sodium bicarbonate cotransporter 1;
PDBTitle: cryoem structure of human slc4a4 sodium-coupled acid-base transporter2 nbce1
31c6navI_



not modelled 6.3 17
PDB header:structural protein
Chain: I: PDB Molecule:m9ud72;
PDBTitle: cryo-em reconstruction of sulfolobus islandicus lal14/1 pilus
32c3rlbB_



not modelled 6.3 13
PDB header:thiamine-binding protein
Chain: B: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
33c2jwaA_



not modelled 6.0 19
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
34c2ks1A_



not modelled 6.0 19
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
35c4wpmA_



not modelled 5.9 6
PDB header:transport protein
Chain: A: PDB Molecule:mrna export protein;
PDBTitle: structure of the chaetomium thermophilum mex67:mtr2 complex
36c2lm1A_



not modelled 5.5 11
PDB header:dna binding protein
Chain: A: PDB Molecule:lysine-specific demethylase lid;
PDBTitle: solution nmr structure of lysine-specific demethylase lid from2 drosophila melanogaster, northeast structural genomics consortium3 target fr824d
37c3dl8C_



not modelled 5.5 15
PDB header:protein transport
Chain: C: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
38c3dl8D_



not modelled 5.5 15
PDB header:protein transport
Chain: D: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
39d2hyda2



not modelled 5.4 9
Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below