Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1103c_(-)_1230976_1231296
DateWed Jul 31 22:05:18 BST 2019
Unique Job IDadb3ed5df5d4dbc0
SequenceMYLPWGVVLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.489 Y:57.643 Z:31.554
Model (left) based on template c3kxeD_
Top template information
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
Confidence and coverage
Confidence: 82.0% Coverage: 55%
58 residues ( 55% of your sequence) have been modelled with 82.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kxeD_



82.0 34
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
2c5cegC_



75.9 12
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
3d2hzaa1



47.7 12
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4d2bj7a1



47.1 8
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
5d1cjxa2



38.2 46
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
6c2ca9B_



30.6 17
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
7c1cjxC_



27.2 46
PDB header:oxidoreductase
Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: crystal structure of pseudomonas fluorescens hppd
8c2izpB_



24.6 30
PDB header:toxin
Chain: B: PDB Molecule:putative membrane antigen;
PDBTitle: bipd - an invasion prtein associated with the type-iii2 secretion system of burkholderia pseudomallei.
9c3sohB_



23.9 24
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: architecture of the flagellar rotor
10c2bj3D_



22.8 9
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
11d2izpa1



22.0 30
Fold:IpaD-like
Superfamily:IpaD-like
Family:IpaD-like
12c1q5vB_



20.0 14
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
13c4rgwB_



18.8 31
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 7;
PDBTitle: crystal structure of a taf1-taf7 complex in human transcription factor2 iid
14d1v4aa2



18.4 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GlnE-like domain
15d2hzab1



16.8 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
16c2k5jB_



13.1 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
17c4me7E_



11.5 28
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
18c3hqxA_



10.3 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0345 protein aciad0356;
PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1
19c3mkyP_



10.3 16
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
20c2wl2B_



10.1 28
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
21c2rqoA_



not modelled 9.6 48
PDB header:toxin
Chain: A: PDB Molecule:polytheonamide b;
PDBTitle: solution structure of polytheonamide b
22c4f9kA_



not modelled 9.4 42
PDB header:transferase regulator
Chain: A: PDB Molecule:camp-dependent protein kinase type i-beta regulatory
PDBTitle: crystal structure of human camp-dependent protein kinase type i-beta2 regulatory subunit (fragment 11-73), northeast structural genomics3 consortium (nesg) target hr8613a
23c2nr1A_



not modelled 9.3 50
PDB header:receptor
Chain: A: PDB Molecule:nr1 m2;
PDBTitle: transmembrane segment 2 of nmda receptor nr1, nmr, 102 structures
24c4imyH_



not modelled 9.2 67
PDB header:transferase
Chain: H: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
25c3mkzU_



not modelled 8.0 18
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
26c6g1nB_



not modelled 8.0 29
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
27c6nklD_



not modelled 7.7 47
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
28c5xonV_



not modelled 7.2 50
PDB header:transcription/rna
Chain: V: PDB Molecule:transcription elongation factor spt4;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
29c3ifzA_



not modelled 6.8 31
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution
30c4z2cA_



not modelled 6.3 31
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: quinolone(moxifloxacin)-dna cleavage complex of gyrase from s.2 pneumoniae
31c3ilwA_



not modelled 6.3 31
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: structure of dna gyrase subunit a n-terminal domain
32d1ab4a_



not modelled 6.2 28
Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
33c4f6cA_



not modelled 5.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:ausa reductase domain protein;
PDBTitle: crystal structure of aureusimine biosynthetic cluster reductase domain
34c4o5pB_



not modelled 5.8 26
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from pseudomonas2 aeruginosa
35c3rafA_



not modelled 5.7 31
PDB header:isomerase/dna/antibiotic
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: quinazolinedione-dna cleavage complex of type iv topoisomerase from s.2 pneumoniae
36c3h7hA_



not modelled 5.7 45
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt4;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)

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