Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1107c_(xseB)_1233971_1234228
DateWed Jul 31 22:05:18 BST 2019
Unique Job ID599eafd779a236fa
SequenceMVCDPNGDDT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.319 Y:39.253 Z:37.035
Model (left) based on template d1vp7a_
Top template information
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
Confidence and coverage
Confidence: 99.7% Coverage: 79%
67 residues ( 79% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vp7a_



99.7 30
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
2d1vp7b_



99.7 29
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
3c1vp7D_



99.6 30
PDB header:hydrolase
Chain: D: PDB Molecule:exodeoxyribonuclease vii small subunit;
PDBTitle: crystal structure of exodeoxyribonuclease vii small subunit2 (np_881400.1) from bordetella pertussis at 2.40 a resolution
4c3he4A_



66.3 21
PDB header:de novo protein
Chain: A: PDB Molecule:synzip6;
PDBTitle: heterospecific coiled-coil pair synzip5:synzip6
5c4lh9A_



42.6 29
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
6d1pina2



35.4 6
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
7c4ynlB_



31.8 29
PDB header:transcription
Chain: B: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the hood domain of anabaena hetr in complex with2 the hexapeptide ergsgr derived from pats
8c2jzvA_



28.7 5
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase
9c2y0sQ_



28.6 24
PDB header:transferase
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
10c2y0sJ_



28.6 24
PDB header:transferase
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
11c3hxxA_



27.6 26
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp
12c3hkzY_



26.8 21
PDB header:transferase
Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
13c3iv1F_



25.4 24
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
14c5knnG_



25.0 17
PDB header:ligase
Chain: G: PDB Molecule:alanine--trna ligase, cytoplasmic;
PDBTitle: evolutionary gain of alanine mischarging to non-cognate trnas with a2 g4:u69 base pair
15c3hkzZ_



22.2 21
PDB header:transferase
Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
16d1wtya_



22.1 14
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:Family 1 bi-partite nucleotidyltransferase subunit
17c2wb1Q_



21.9 32
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
18c1f8aB_



21.5 7
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1;
PDBTitle: structural basis for the phosphoserine-proline recognition by group iv2 ww domains
19c2gl2B_



21.3 12
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
20c2wb1J_



21.1 32
PDB header:transcription
Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
21c3ucsB_



not modelled 19.9 18
PDB header:chaperone
Chain: B: PDB Molecule:chaperone-modulator protein cbpm;
PDBTitle: crystal structure of the complex between cbpa j-domain and cbpm
22c2dl1A_



not modelled 17.9 14
PDB header:protein transport
Chain: A: PDB Molecule:spartin;
PDBTitle: solution structure of the mit domain from human spartin
23c4h79A_



not modelled 17.6 38
PDB header:dna binding protein
Chain: A: PDB Molecule:crispr-associated protein, cse2 family;
PDBTitle: crystal structure of casb from thermobifida fusca
24c2lw1A_



not modelled 17.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:abc transporter atp-binding protein uup;
PDBTitle: the c-terminal domain of the uup protein is a dna-binding coiled coil2 motif
25c2krxA_



not modelled 17.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
26c2r5xA_



not modelled 16.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein yugn from2 geobacillus kaustophilus hta426
27c6g6hB_



not modelled 16.1 18
PDB header:de novo protein
Chain: B: PDB Molecule:5h2l_2.1-i9l;
PDBTitle: crystal structure of an antiparallel five-helix coiled coil 5h2l_2.1-2 i9l
28c6g6hE_



not modelled 16.1 18
PDB header:de novo protein
Chain: E: PDB Molecule:5h2l_2.1-i9l;
PDBTitle: crystal structure of an antiparallel five-helix coiled coil 5h2l_2.1-2 i9l
29c6g6hD_



not modelled 16.1 18
PDB header:de novo protein
Chain: D: PDB Molecule:5h2l_2.1-i9l;
PDBTitle: crystal structure of an antiparallel five-helix coiled coil 5h2l_2.1-2 i9l
30c6g6hC_



not modelled 16.1 18
PDB header:de novo protein
Chain: C: PDB Molecule:5h2l_2.1-i9l;
PDBTitle: crystal structure of an antiparallel five-helix coiled coil 5h2l_2.1-2 i9l
31c6g6hA_



not modelled 16.1 18
PDB header:de novo protein
Chain: A: PDB Molecule:5h2l_2.1-i9l;
PDBTitle: crystal structure of an antiparallel five-helix coiled coil 5h2l_2.1-2 i9l
32c4ysvA_



not modelled 15.9 11
PDB header:isomerase
Chain: A: PDB Molecule:putative 4-aminobutyrate aminotransferase;
PDBTitle: structure of aminoacid racemase in apo-form
33c1ic2B_



not modelled 15.9 16
PDB header:contractile protein
Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle;
PDBTitle: deciphering the design of the tropomyosin molecule
34c2ehwD_



not modelled 15.5 21
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein tthb059;
PDBTitle: conserved hypothetical proteim (tthb059) from thermo thermophilus hb8
35c3pu2G_



not modelled 15.1 24
PDB header:structure genomics, unknown function
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q3j4m4_rhos4 protein from rhodobacter2 sphaeroides. northeast structural genomics consortium target rhr263.
36c1eqfA_



not modelled 15.0 7
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase ii transcription initiation
PDBTitle: crystal structure of the double bromodomain module from2 human tafii250
37c2waqQ_



not modelled 13.9 24
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-directed rna2 polymerase
38c4mjsQ_



not modelled 13.1 21
PDB header:transferase/protein binding
Chain: Q: PDB Molecule:protein kinase c zeta type;
PDBTitle: crystal structure of a pb1 complex
39d1mb6a_



not modelled 13.0 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
40c5n9jG_



not modelled 12.7 13
PDB header:transcription
Chain: G: PDB Molecule:mediator of rna polymerase ii transcription subunit 4;
PDBTitle: core mediator of transcriptional regulation
41d1niya_



not modelled 12.7 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
42c5u07B_



not modelled 12.6 17
PDB header:immune system
Chain: B: PDB Molecule:cse2;
PDBTitle: crispr rna-guided surveillance complex
43c4iwbA_



not modelled 12.5 9
PDB header:motor protein
Chain: A: PDB Molecule:flic, flis chimera;
PDBTitle: novel fold of flic/flis fusion protein
44c6dmpB_



not modelled 12.1 22
PDB header:de novo protein
Chain: B: PDB Molecule:designed orthogonal protein dhd13_xaaa_b;
PDBTitle: de novo design of a protein heterodimer with specificity mediated by2 hydrogen bond networks
45c2d9eA_



not modelled 11.8 16
PDB header:transcription
Chain: A: PDB Molecule:peregrin;
PDBTitle: solution structure of the bromodomain of peregrin
46c4rodA_



not modelled 11.5 9
PDB header:transcription
Chain: A: PDB Molecule:transcription factor iiib 50 kda subunit;
PDBTitle: human tfiib-related factor 2 (brf2) and tbp bound to trnau1 promoter
47c4b1pJ_



not modelled 11.4 18
PDB header:transferase/dna
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
48c4hpqE_



not modelled 11.4 19
PDB header:protein transport
Chain: E: PDB Molecule:atg31;
PDBTitle: crystal structure of the atg17-atg31-atg29 complex
49c3q94B_



not modelled 11.2 14
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
50c5we3A_



not modelled 11.1 33
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-ps1a;
PDBTitle: solution nmr structure of paurtx-3
51d1m5ya3



not modelled 11.1 18
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
52c2lj4A_



not modelled 10.9 10
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase/rotamase, putative;
PDBTitle: solution structure of the tbpin1
53c4aybQ_



not modelled 10.9 18
PDB header:transferase
Chain: Q: PDB Molecule:dna-directed rna polymerase;
PDBTitle: rnap at 3.2ang
54c1yw5A_



not modelled 10.9 10
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
55c5lxoG_



not modelled 10.8 15
PDB header:structural protein
Chain: G: PDB Molecule:transforming acidic coiled-coil-containing protein 3;
PDBTitle: coiled-coil protein
56c3mxzA_



not modelled 10.5 19
PDB header:chaperone
Chain: A: PDB Molecule:tubulin-specific chaperone a;
PDBTitle: crystal structure of tubulin folding cofactor a from arabidopsis2 thaliana
57c5epmC_



not modelled 10.4 57
PDB header:toxin/immune system
Chain: C: PDB Molecule:beta-theraphotoxin-cm1a;
PDBTitle: ceratotoxin variant in complex with specific antibody fab fragment
58c4eijA_



not modelled 10.2 24
PDB header:replication
Chain: A: PDB Molecule:p protein;
PDBTitle: structure of the mumps virus phosphoprotein oligomerization domain
59c3epyA_



not modelled 10.0 27
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl-coa-binding domain-containing protein 7;
PDBTitle: crystal structure of human acyl-coa binding domain 7 complexed with2 palmitoyl-coa
60c4merD_



not modelled 10.0 5
PDB header:unknown function
Chain: D: PDB Molecule:streptococcal histidine-rich glycoprotein interacting
PDBTitle: crystal structure of the novel protein and virulence factor ship2 (q99xu0) from streptococcus pyogenes
61c4uotD_



not modelled 9.8 18
PDB header:de novo protein
Chain: D: PDB Molecule:designed helical bundle 5h2l;
PDBTitle: thermodynamic hyperstability in parametrically designed2 helical bundles
62c4uotC_



not modelled 9.8 18
PDB header:de novo protein
Chain: C: PDB Molecule:designed helical bundle 5h2l;
PDBTitle: thermodynamic hyperstability in parametrically designed2 helical bundles
63c4uotA_



not modelled 9.8 18
PDB header:de novo protein
Chain: A: PDB Molecule:designed helical bundle 5h2l;
PDBTitle: thermodynamic hyperstability in parametrically designed2 helical bundles
64c4uotE_



not modelled 9.8 18
PDB header:de novo protein
Chain: E: PDB Molecule:designed helical bundle 5h2l;
PDBTitle: thermodynamic hyperstability in parametrically designed2 helical bundles
65c4uotB_



not modelled 9.8 18
PDB header:de novo protein
Chain: B: PDB Molecule:designed helical bundle 5h2l;
PDBTitle: thermodynamic hyperstability in parametrically designed2 helical bundles
66d1wwma1



not modelled 9.6 20
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:TENA/THI-4
67d2ftsa2



not modelled 9.6 7
Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
68d1uz5a2



not modelled 9.5 7
Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
69c4b1oQ_



not modelled 9.4 18
PDB header:transferase/dna
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
70c6dmpA_



not modelled 9.4 21
PDB header:de novo protein
Chain: A: PDB Molecule:designed orthogonal protein dhd13_xaaa_a;
PDBTitle: de novo design of a protein heterodimer with specificity mediated by2 hydrogen bond networks
71c5jfzB_



not modelled 9.3 22
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g
72c5jfzF_



not modelled 9.3 22
PDB header:transferase
Chain: F: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g
73c3ctwB_



not modelled 9.0 35
PDB header:protein binding
Chain: B: PDB Molecule:rcda;
PDBTitle: crystal structure of rcda from caulobacter crescentus cb15
74d1riqa1



not modelled 9.0 20
Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
75c3elfA_



not modelled 8.5 10
PDB header:lyase
Chain: A: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase
76c4wvmB_



not modelled 8.5 2
PDB header:toxin
Chain: B: PDB Molecule:stonustoxin subunit beta;
PDBTitle: stonustoxin structure
77c5tosB_



not modelled 8.5 16
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase bik1;
PDBTitle: botrytis-induced kinase 1 (bik1) from arabidopsis thaliana
78c1u2uA_



not modelled 8.3 23
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper
79c4amqA_



not modelled 8.3 15
PDB header:transferase
Chain: A: PDB Molecule:l544;
PDBTitle: a megaviridae orfan gene encodes a new nucleotidyl transferase
80c3cmaG_



not modelled 8.2 23
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the structure of cca and cca-phe-cap-bio bound to the large ribosomal2 subunit of haloarcula marismortui
81c2iswB_



not modelled 8.2 14
PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
82c3u0cA_



not modelled 8.0 10
PDB header:cell invasion
Chain: A: PDB Molecule:invasin ipab;
PDBTitle: crystal structure of n-terminal region of type iii secretion first2 translocator ipab (residues 74-224)
83d1j6ya_



not modelled 8.0 8
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
84c5jffD_



not modelled 7.8 22
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
85c5uyoA_



not modelled 7.8 25
PDB header:de novo protein
Chain: A: PDB Molecule:heeh_rd4_0097;
PDBTitle: solution nmr structure of the de novo mini protein heeh_rd4_0097
86c6btvA_



not modelled 7.8 57
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-cm1b;
PDBTitle: solution nmr structures for ccotx-ii
87c3cd0B_



not modelled 7.6 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase;
PDBTitle: thermodynamic and structure guided design of statin hmg-coa reductase2 inhibitors
88d2cpta1



not modelled 7.4 17
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
89d1dqaa4



not modelled 7.4 20
Fold:Substrate-binding domain of HMG-CoA reductase
Superfamily:Substrate-binding domain of HMG-CoA reductase
Family:Substrate-binding domain of HMG-CoA reductase
90d1gvfa_



not modelled 7.3 10
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
91c3l32B_



not modelled 7.3 30
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
92d1dosa_



not modelled 7.3 10
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
93c3cmeG_



not modelled 7.3 24
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the structure of ca and cca-phe-cap-bio bound to the large ribosomal2 subunit of haloarcula marismortui
94c6ofuC_



not modelled 7.3 17
PDB header:lyase
Chain: C: PDB Molecule:ydji aldolase;
PDBTitle: x-ray crystal structure of the ydji aldolase from escherichia coli k12
95c1junB_



not modelled 7.2 18
PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer
96c5h3iC_



not modelled 7.2 18
PDB header:lipid binding protein
Chain: C: PDB Molecule:putative acyl-coa-binding protein;
PDBTitle: crystal structure of oryza sativa acyl-coa-binding protein 2
97c2mt7A_



not modelled 7.1 43
PDB header:toxin
Chain: A: PDB Molecule:hs1a;
PDBTitle: solution structure of spider-venom peptide hs1a
98c4zmiA_



not modelled 7.1 30
PDB header:dna binding protein
Chain: A: PDB Molecule:telomere length regulator taz1;
PDBTitle: crystal structure of the helical domain of s. pombe taz1
99c4pn8C_



not modelled 7.1 13
PDB header:de novo protein
Chain: C: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.

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