Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1110_(ispH)_1236190_1237197
DateWed Jul 31 22:05:19 BST 2019
Unique Job ID2cd887ed6b90b14a
SequenceMVPTVDMGIP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.403 Y:55.499 Z:41.731
Model (left) based on template c3urkA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: isph in complex with propynyl diphosphate (1061)
Confidence and coverage
Confidence:100.0% Coverage: 91%
305 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3urkA_
100.0 53
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: isph in complex with propynyl diphosphate (1061)
2c3ke8A_
100.0 53
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: crystal structure of isph:hmbpp-complex
3c4n7bA_
100.0 41
PDB header:oxidoreductase
Chain: A: PDB Molecule:lytb;
PDBTitle: structure of the e-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate2 reductase from plasmodium falciparum
4c3dnfB_
100.0 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
5c5c4nD_
89.2 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:precorrin-6a reductase;
PDBTitle: cobk precorrin-6a reductase
6c3rfuC_
87.6 23
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:copper efflux atpase;
PDBTitle: crystal structure of a copper-transporting pib-type atpase
7c4zhtB_
86.3 17
PDB header:isomerase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of udp-glcnac 2-epimerase
8c3ff4A_
85.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
9c3j09A_
80.2 16
PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
10c4zo9B_
80.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:lin1840 protein;
PDBTitle: crystal structure of mutant (d270a) beta-glucosidase from listeria2 innocua in complex with laminaribiose
11c3h5lB_
78.1 16
PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc transporter;
PDBTitle: crystal structure of a putative branched-chain amino acid abc2 transporter from silicibacter pomeroyi
12c3j08A_
78.0 16
PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
13d1m2ka_
77.9 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
14d1j6ua1
76.0 16
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
15c6oviA_
75.9 10
PDB header:lyase
Chain: A: PDB Molecule:keto-deoxy-phosphogluconate aldolase;
PDBTitle: crystal structure of kdpg aldolase from legionella pneumophila with2 pyruvate captured at low ph as a covalent carbinolamine intermediate
16c4es6A_
75.2 10
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of hemd (pa5259) from pseudomonas aeruginosa (pao1)2 at 2.22 a resolution
17c3hutA_
73.5 15
PDB header:transport protein
Chain: A: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum
18c3cumA_
72.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
19c2olsA_
71.6 16
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate synthase;
PDBTitle: the crystal structure of the phosphoenolpyruvate synthase from2 neisseria meningitidis
20c1kblA_
71.4 23
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: pyruvate phosphate dikinase
21d1ma3a_
not modelled 71.0 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
22c3afoB_
not modelled 70.9 12
PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
23c2bg5C_
not modelled 70.2 19
PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme i-domain2 from the thermoanaerobacter tengcongensis pep: sugar3 phosphotransferase system (pts)
24d1xmta_
not modelled 69.9 20
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
25d2hk6a1
not modelled 65.9 14
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
26c3l4eA_
not modelled 65.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
27c4e38A_
not modelled 65.1 19
PDB header:lyase
Chain: A: PDB Molecule:keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
PDBTitle: crystal structure of probable keto-hydroxyglutarate-aldolase from2 vibrionales bacterium swat-3 (target efi-502156)
28c3mw8A_
not modelled 65.0 22
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution
29d1fyea_
not modelled 64.4 17
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
30c5i0cA_
not modelled 64.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein yjdj;
PDBTitle: crystal structure of predicted acyltransferase yjdj with acyl-coa n-2 acyltransferase domain from escherichia coli str. k-12
31c6a4tB_
not modelled 62.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase e;
PDBTitle: crystal structure of peptidase e from deinococcus radiodurans r1
32c6q7jB_
not modelled 61.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:exo-1,4-beta-xylosidase xlnd;
PDBTitle: gh3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine2 activity based probe
33c3fg9B_
not modelled 61.8 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of universal stress protein uspa family;
PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1
34c3zdrA_
not modelled 61.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase domain of the bifunctional
PDBTitle: structure of the alcohol dehydrogenase (adh) domain of a2 bifunctional adhe dehydrogenase from geobacillus3 thermoglucosidasius ncimb 11955
35c5ereA_
not modelled 60.8 16
PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: extracellular ligand binding receptor from desulfohalobium retbaense2 dsm5692
36c4maaA_
not modelled 60.7 15
PDB header:transport protein
Chain: A: PDB Molecule:putative branched-chain amino acid abc transporter,
PDBTitle: the crystal structure of amino acid abc transporter substrate-binding2 protein from pseudomonas fluorescens pf-5
37c5vtoA_
not modelled 60.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:blasticidin m;
PDBTitle: solution structure of blsm
38c4qccA_
not modelled 59.9 16
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
39d1kbla1
not modelled 58.9 21
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
40d1qo0a_
not modelled 58.4 17
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
41c4evsA_
not modelled 58.2 7
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter subunit, substrate-binding
PDBTitle: crystal structure of abc transporter from r. palustris - solute2 binding protein (rpa0985) in complex with 4-hydroxybenzoate
42c1jzdA_
not modelled 55.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
43d2d59a1
not modelled 55.8 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
44c4yt2A_
not modelled 55.6 15
PDB header:metal binding protein
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmd ii from methanocaldococcus jannaschii
45c6huxA_
not modelled 54.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmdii from methanocaldococcus jannaschii reconstitued with fe-2 guanylylpyridinol (fegp) cofactor and co-crystallized with methenyl-3 tetrahydromethanopterin at 2.5 a resolution
46c3pkiF_
not modelled 54.8 19
PDB header:hydrolase
Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: human sirt6 crystal structure in complex with adp ribose
47c3w6uA_
not modelled 54.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, nad-binding protein;
PDBTitle: crystal structure of nadp bound l-serine 3-dehydrogenase from2 hyperthermophilic archaeon pyrobaculum calidifontis
48c2iz6A_
not modelled 54.5 18
PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein
49c3ac0B_
not modelled 54.4 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase i;
PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
50c5mrwF_
not modelled 54.3 19
PDB header:hydrolase
Chain: F: PDB Molecule:potassium-transporting atpase atp-binding subunit;
PDBTitle: structure of the kdpfabc complex
51c4mlcA_
not modelled 54.1 20
PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: abc transporter substrate-binding protein fromdesulfitobacterium2 hafniense
52c4dllB_
not modelled 53.8 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-hydroxy-3-oxopropionate reductase;
PDBTitle: crystal structure of a 2-hydroxy-3-oxopropionate reductase from2 polaromonas sp. js666
53c5i01B_
not modelled 53.4 22
PDB header:isomerase
Chain: B: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of phosphoheptose isomerase gmha from neisseria gonorrhoeae
54d2g17a1
not modelled 53.2 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
55c1gqqA_
not modelled 53.1 22
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus influenzae
56c3snrA_
not modelled 52.0 21
PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
57c4n03A_
not modelled 51.8 5
PDB header:transport protein
Chain: A: PDB Molecule:abc-type branched-chain amino acid transport systems
PDBTitle: fatty acid abc transporter substrate-binding protein from2 thermomonospora curvata
58d1yq2a5
not modelled 51.7 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
59d2jfga1
not modelled 50.8 17
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
60d1h6za1
not modelled 50.7 13
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
61d1yc5a1
not modelled 50.7 19
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
62d1r57a_
not modelled 50.5 31
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
63c3h6hB_
not modelled 50.3 11
PDB header:membrane protein
Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2;
PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form
64c1j6uA_
not modelled 50.0 17
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase murc (tm0231)2 from thermotoga maritima at 2.3 a resolution
65d1vbga1
not modelled 49.8 26
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
66c6cauA_
not modelled 49.7 14
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii2 ab5075-uw with amppnp
67c3i09A_
not modelled 49.6 15
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein;
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
68c4evrA_
not modelled 49.5 13
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter subunit, substrate-binding
PDBTitle: crystal structure of abc transporter from r. palustris - solute2 binding protein (rpa0668) in complex with benzoate
69c2hroA_
not modelled 49.5 19
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
70c3s40C_
not modelled 49.1 24
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
71c1t3bA_
not modelled 48.9 13
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
72d2j13a1
not modelled 48.7 11
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
73c4gnrA_
not modelled 48.3 17
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein-branched chain
PDBTitle: 1.0 angstrom resolution crystal structure of the branched-chain amino2 acid transporter substrate binding protein livj from streptococcus3 pneumoniae str. canada mdr_19a in complex with isoleucine
74c5f56A_
not modelled 48.2 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded-dna-specific exonuclease;
PDBTitle: structure of recj complexed with dna and ssb-ct
75c6hpdA_
not modelled 48.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase (gh2);
PDBTitle: the structure of a beta-glucuronidase from glycoside hydrolase family2 2
76c3zg6A_
not modelled 47.8 19
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-6;
PDBTitle: the novel de-long chain fatty acid function of human sirt6
77c3ej6D_
not modelled 47.5 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase-3;
PDBTitle: neurospora crassa catalase-3 crystal structure
78c4i3gB_
not modelled 47.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of desr, a beta-glucosidase from streptomyces2 venezuelae in complex with d-glucose.
79c5g6sD_
not modelled 47.2 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:imine reductase;
PDBTitle: imine reductase from aspergillus oryzae in complex with nadp(h) and2 (r)-rasagiline
80c3sg0A_
not modelled 46.6 23
PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2
81c4npbA_
not modelled 46.0 17
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
82d2je8a5
not modelled 45.7 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
83c3eafA_
not modelled 44.0 9
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
84c2hwgA_
not modelled 43.9 15
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar2 phosphotransferase system
85d1uc8a1
not modelled 43.8 14
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Lysine biosynthesis enzyme LysX, N-terminal domain
86c4l1gB_
not modelled 43.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:peptidoglycan n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of the bc1960 peptidoglycan n-acetylglucosamine2 deacetylase from bacillus cereus
87d1w5fa1
not modelled 43.0 14
Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
88d7reqa2
not modelled 42.5 16
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
89c3n0xA_
not modelled 42.3 17
PDB header:transport protein
Chain: A: PDB Molecule:possible substrate binding protein of abc transporter
PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution
90c5nymA_
not modelled 42.3 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-like protein 2.1;
PDBTitle: crystal structure of the atypical poplar thioredoxin-like2.1 in2 reduced state
91d1t3ba1
not modelled 42.3 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
92c4f11A_
not modelled 42.2 17
PDB header:signaling protein
Chain: A: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 2;
PDBTitle: crystal structure of the extracellular domain of human gaba(b)2 receptor gbr2
93c1vbhA_
not modelled 42.1 26
PDB header:transferase
Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase;
PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
94d1vhca_
not modelled 42.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
95d1k0ma2
not modelled 41.9 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
96c3mn1B_
not modelled 41.5 10
PDB header:hydrolase
Chain: B: PDB Molecule:probable yrbi family phosphatase;
PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a
97d2hrca1
not modelled 41.4 16
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
98c4umwA_
not modelled 41.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: crystal structure of a zinc-transporting pib-type atpase in2 e2.pi state
99d1p3da1
not modelled 41.0 24
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
100c3b8cB_
not modelled 40.6 13
PDB header:hydrolase
Chain: B: PDB Molecule:atpase 2, plasma membrane-type;
PDBTitle: crystal structure of a plasma membrane proton pump
101c4kv7A_
not modelled 40.5 17
PDB header:unknown function
Chain: A: PDB Molecule:probable leucine/isoleucine/valine-binding protein;
PDBTitle: the crystal structure of a possible leucine/isoleucine/valine-binding2 protein from rhodopirellula baltica sh 1
102c3fwzA_
not modelled 40.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ybal;
PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli
103d1vlja_
not modelled 40.1 13
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
104d2dlxa1
not modelled 39.9 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:UAS domain
105c5kuhB_
not modelled 39.7 11
PDB header:signaling protein
Chain: B: PDB Molecule:glutamate receptor ionotropic, kainate 2;
PDBTitle: gluk2em with ly466195
106c6qkzA_
not modelled 39.5 8
PDB header:membrane protein
Chain: A: PDB Molecule:glua1;
PDBTitle: full length glua1/2-gamma8 complex
107c3cmgA_
not modelled 39.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
108c2r8zC_
not modelled 39.0 13
PDB header:hydrolase
Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase;
PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion
109d1s5pa_
not modelled 38.7 14
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
110c2vpiA_
not modelled 38.7 3
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
111c1v57A_
not modelled 38.7 17
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
112d1s1pa_
not modelled 38.5 11
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
113c4ru0B_
not modelled 38.5 13
PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc transporter,
PDBTitle: the crystal structure of abc transporter permease from pseudomonas2 fluorescens group
114c3f4cA_
not modelled 38.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:organophosphorus hydrolase;
PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound
115d1iuka_
not modelled 38.3 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
116c3p9zA_
not modelled 38.2 17
PDB header:ligase
Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd);
PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695
117c2mtbA_
not modelled 37.8 5
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin-2;
PDBTitle: solution structure of apo_fldb
118c4nqrA_
not modelled 37.4 15
PDB header:transport protein
Chain: A: PDB Molecule:amino acid/amide abc transporter substrate-binding protein,
PDBTitle: the crystal structure of a solute-binding protein (n280d mutant) from2 anabaena variabilis atcc 29413 in complex with alanine
119d1ofua1
not modelled 37.3 16
Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
120d1jhfa1
not modelled 37.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite