Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1115_(-)_1240192_1240890
DateWed Jul 31 22:05:19 BST 2019
Unique Job ID5deea439c2ae151e
SequenceVISTTRIDFL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.614 Y:36.116 Z:37.036
Model (left) based on template c2xivA_
Top template information
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
Confidence and coverage
Confidence: 99.9% Coverage: 50%
117 residues ( 50% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xivA_
99.9 21
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
2c6biqA_
99.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:clan ca, family c40, nlpc/p60 superfamily cysteine
PDBTitle: structure of nlpc2 from trichomonas vaginalis
3c3pbiA_
99.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
4c6b8cA_
99.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60;
PDBTitle: crystal structure of nlpc/p60 domain of peptidoglycan hydrolase saga
5c2fg0B_
99.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
6c3gt2A_
99.9 21
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium paratuberculosis2 antigen map1272c
7d2evra2
99.9 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
8c4fdyA_
99.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
9c3npfB_
99.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi;
PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution
10c3i86A_
99.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204
11c2k1gA_
99.9 16
PDB header:lipoprotein
Chain: A: PDB Molecule:lipoprotein spr;
PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162
12c4hpeA_
99.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative cell wall hydrolase tn916-like,ctn1-orf17;
PDBTitle: crystal structure of a putative cell wall hydrolase (cd630_03720) from2 clostridium difficile 630 at 2.38 a resolution
13c3h41A_
99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60 family protein;
PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution
14c4xcmB_
99.7 23
PDB header:hydrolase
Chain: B: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the putative nlpc/p60 d,l endopeptidase from t.2 thermophilus
15c3m1uB_
99.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase;
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
16d2if6a1
95.4 22
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:YiiX-like
17c2p1gA_
94.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative xylanase;
PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis
18c5udmA_
93.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:phage-associated cell wall hydrolase;
PDBTitle: phage-associated cell wall hydrolase plypy from streptococcus2 pyogenes, space group p6522
19c2lktA_
88.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:retinoic acid receptor responder protein 3;
PDBTitle: solution structure of n-terminal domain of human tig3 in 2 m urea
20c2kytA_
86.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:group xvi phospholipase a2;
PDBTitle: solution structure of the h-rev107 n-terminal domain
21c2im9A_
not modelled 86.7 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460
22d2im9a1
not modelled 86.7 28
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Lpg0564-like
23c4h4jA_
not modelled 86.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a n-acetylmuramoyl-l-alanine amidase2 (bacuni_02947) from bacteroides uniformis atcc 8492 at 1.15 a3 resolution
24c4pa5A_
not modelled 80.1 15
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: tgl - a bacterial spore coat transglutaminase - cystamine complex
25c3kw0D_
not modelled 76.2 23
PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
26c4f0wA_
not modelled 71.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of type effector tse1 c30a mutant from pseudomonas2 aeruginousa
27c4f4mA_
not modelled 70.9 18
PDB header:hydrolase regulator
Chain: A: PDB Molecule:papain peptidoglycan amidase effector tse1;
PDBTitle: structure of the type vi peptidoglycan amidase effector tse1 (c30a)2 from pseudomonas aeruginosa
28c2lrjA_
not modelled 69.2 25
PDB header:biosynthetic protein
Chain: A: PDB Molecule:staphyloxanthin biosynthesis protein, putative;
PDBTitle: nmr solution structure of staphyloxanthin biosynthesis protein
29c2k3aA_
not modelled 64.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:chap domain protein;
PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11
30c5t1qB_
not modelled 61.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:n-acetylmuramoyl-l-alanine amidase domain-containing
PDBTitle: 2.15 angstrom crystal structure of n-acetylmuramoyl-l-alanine amidase2 from staphylococcus aureus.
31c4hzbA_
not modelled 40.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
32c4hfkB_
not modelled 37.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the type vi effector-immunity complex tae4-tai42 from enterobacter cloacae
33c4olkB_
not modelled 31.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:endolysin;
PDBTitle: the chap domain of lysgh15
34d1f35a_
not modelled 19.2 17
Fold:Olfactory marker protein
Superfamily:Olfactory marker protein
Family:Olfactory marker protein
35c6avaA_
not modelled 13.0 36
PDB header:toxin
Chain: A: PDB Molecule:insectotoxin-i1;
PDBTitle: exploring cystine dense peptide space to open a unique molecular2 toolbox
36c4b6iD_
not modelled 12.6 17
PDB header:signaling protein
Chain: D: PDB Molecule:sma2266;
PDBTitle: crystal structure rap2b (sma2266) from serratia marcescens
37c3cjiC_
not modelled 10.0 27
PDB header:virus
Chain: C: PDB Molecule:polyprotein;
PDBTitle: structure of seneca valley virus-001
38d1iyca_
not modelled 6.5 44
Fold:Invertebrate chitin-binding proteins
Superfamily:Invertebrate chitin-binding proteins
Family:Antifungal peptide scarabaecin
39c3zibD_
not modelled 6.5 21
PDB header:protein binding
Chain: D: PDB Molecule:rap2a sma2265;
PDBTitle: rap2a protein (sma2265) from serratia marcescens
40c2vpmB_
not modelled 6.2 24
PDB header:ligase
Chain: B: PDB Molecule:trypanothione synthetase;
PDBTitle: trypanothione synthetase
41d2io8a2
not modelled 5.8 39
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:CHAP domain
42c2ls1A_
not modelled 5.7 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of sviceucin, an antibacterial type i lasso peptide from2 streptomyces sviceus
43c5fx8U_
not modelled 5.7 45
PDB header:oxidoreductase
Chain: U: PDB Molecule:zonadhesin;
PDBTitle: complete structure of manganese lipoxygenase of gaeumannomyces2 graminis and partial structure of zonadhesin of komagataella3 pastoris

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