Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1118c_(-)_1241976_1242836
DateWed Jul 31 22:05:20 BST 2019
Unique Job ID0f2d86880905e991
SequenceVQSGPHLVGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.965 Y:41.028 Z:45.735
Model (left) based on template c3kw0D_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 58%
167 residues ( 58% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kw0D_
100.0 17
PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
2d2if6a1
99.9 25
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:YiiX-like
3c2p1gA_
97.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative xylanase;
PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis
4d2evra2
96.3 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
5c2fg0B_
95.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
6c6biqA_
95.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:clan ca, family c40, nlpc/p60 superfamily cysteine
PDBTitle: structure of nlpc2 from trichomonas vaginalis
7c3npfB_
94.3 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi;
PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution
8c2k1gA_
94.3 39
PDB header:lipoprotein
Chain: A: PDB Molecule:lipoprotein spr;
PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162
9c4h4jA_
93.7 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a n-acetylmuramoyl-l-alanine amidase2 (bacuni_02947) from bacteroides uniformis atcc 8492 at 1.15 a3 resolution
10c6b8cA_
93.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60;
PDBTitle: crystal structure of nlpc/p60 domain of peptidoglycan hydrolase saga
11c3h41A_
93.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60 family protein;
PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution
12c3pbiA_
92.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
13c2xivA_
92.1 22
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
14c2im9A_
91.7 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460
15d2im9a1
91.7 11
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Lpg0564-like
16c4hpeA_
91.6 8
PDB header:hydrolase
Chain: A: PDB Molecule:putative cell wall hydrolase tn916-like,ctn1-orf17;
PDBTitle: crystal structure of a putative cell wall hydrolase (cd630_03720) from2 clostridium difficile 630 at 2.38 a resolution
17c4fdyA_
90.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
18c3gt2A_
90.3 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium paratuberculosis2 antigen map1272c
19d2io8a2
87.5 12
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:CHAP domain
20c4xcmB_
86.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the putative nlpc/p60 d,l endopeptidase from t.2 thermophilus
21c4olkB_
not modelled 85.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:endolysin;
PDBTitle: the chap domain of lysgh15
22c3i86A_
not modelled 76.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204
23c2lrjA_
not modelled 68.0 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:staphyloxanthin biosynthesis protein, putative;
PDBTitle: nmr solution structure of staphyloxanthin biosynthesis protein
24c3mvnA_
not modelled 60.5 17
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-
PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
25d2jfga2
not modelled 57.6 15
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
26c2vpmB_
not modelled 54.8 24
PDB header:ligase
Chain: B: PDB Molecule:trypanothione synthetase;
PDBTitle: trypanothione synthetase
27c2am1A_
not modelled 48.2 19
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d-
PDBTitle: sp protein ligand 1
28c2lktA_
not modelled 44.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:retinoic acid receptor responder protein 3;
PDBTitle: solution structure of n-terminal domain of human tig3 in 2 m urea
29c4bubA_
not modelled 42.1 30
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld-lysine
PDBTitle: crystal structure of mure ligase from thermotoga maritima2 in complex with adp
30c2f00A_
not modelled 42.0 17
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
31c2wtzC_
not modelled 41.7 30
PDB header:ligase
Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate-
PDBTitle: mure ligase of mycobacterium tuberculosis
32c1e8cB_
not modelled 41.3 20
PDB header:ligase
Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate
PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide synthetase from2 e. coli
33c3uagA_
not modelled 41.3 18
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
34c3lk7A_
not modelled 41.1 22
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-glutamate2 (murd) ligase from streptococcus agalactiae to 1.5a
35c5ibzD_
not modelled 38.5 32
PDB header:lyase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a novel cyclase (pfam04199).
36c2k3aA_
not modelled 37.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:chap domain protein;
PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11
37d1ofla_
not modelled 33.6 21
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Chondroitinase B
38c4eyzB_
not modelled 33.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:cellulosome-related protein module from ruminococcus
PDBTitle: crystal structure of an uncommon cellulosome-related protein module2 from ruminococcus flavefaciens that resembles papain-like cysteine3 peptidases
39c5udmA_
not modelled 32.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:phage-associated cell wall hydrolase;
PDBTitle: phage-associated cell wall hydrolase plypy from streptococcus2 pyogenes, space group p6522
40c4c13A_
not modelled 31.5 15
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--l-lysine ligase;
PDBTitle: x-ray crystal structure of staphylococcus aureus mure with udp-murnac-2 ala-glu-lys
41c2xjaD_
not modelled 31.3 30
PDB header:ligase
Chain: D: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,6-
PDBTitle: structure of mure from m.tuberculosis with dipeptide and adp
42c4ba6A_
not modelled 30.4 36
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:endoglucanase cel5a;
PDBTitle: high resolution structure of the c-terminal family 65 carbohydrate2 binding module (cbm65b) of endoglucanase cel5a from eubacterium3 cellulosolvens
43c4bucA_
not modelled 29.6 22
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form
44c3m1uB_
not modelled 29.1 10
PDB header:hydrolase
Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase;
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
45d2v4ja2
not modelled 27.1 47
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
46d1p3da2
not modelled 27.1 24
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
47d1e8ca2
not modelled 25.8 25
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
48c3hn7A_
not modelled 23.6 14
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
49c1dbgA_
not modelled 23.0 21
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase b;
PDBTitle: crystal structure of chondroitinase b
50c2ioaA_
not modelled 22.8 14
PDB header:ligase, hydrolase
Chain: A: PDB Molecule:bifunctional glutathionylspermidine
PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor
51d1y88a2
not modelled 21.9 31
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:MRR-like
52c4lt5A_
not modelled 20.1 33
PDB header:oxidoreductase/dna
Chain: A: PDB Molecule:naegleria tet-like dioxygenase;
PDBTitle: structure of a naegleria tet-like dioxygenase in complex with 5-2 methylcytosine dna
53c2eb0B_
not modelled 18.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:manganese-dependent inorganic pyrophosphatase;
PDBTitle: crystal structure of methanococcus jannaschii putative family ii2 inorganic pyrophosphatase
54c1gqqA_
not modelled 18.4 24
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus influenzae
55c2kytA_
not modelled 18.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:group xvi phospholipase a2;
PDBTitle: solution structure of the h-rev107 n-terminal domain
56c4pyzA_
not modelled 17.8 30
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7;
PDBTitle: crystal structure of the first two ubl domains of deubiquitylase usp7
57c6odmK_
not modelled 16.0 22
PDB header:viral protein
Chain: K: PDB Molecule:capsid vertex component 2;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
58c3vsvD_
not modelled 14.9 16
PDB header:hydrolase
Chain: D: PDB Molecule:xylosidase;
PDBTitle: the complex structure of xylc with xylose
59d1k20a_
not modelled 14.3 14
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
60c5t1qB_
not modelled 13.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:n-acetylmuramoyl-l-alanine amidase domain-containing
PDBTitle: 2.15 angstrom crystal structure of n-acetylmuramoyl-l-alanine amidase2 from staphylococcus aureus.
61d2ahua2
not modelled 13.6 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
62c1w78A_
not modelled 12.9 17
PDB header:synthase
Chain: A: PDB Molecule:folc bifunctional protein;
PDBTitle: e.coli folc in complex with dhpp and adp
63d1wpna_
not modelled 12.9 21
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
64c2fphX_
not modelled 12.9 26
PDB header:dna binding protein
Chain: X: PDB Molecule:ylmh;
PDBTitle: cell division protein ylmh from streptococcus pneumoniae
65d1s04a_
not modelled 12.6 25
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
66d1d02a_
not modelled 12.6 26
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease MunI
67c4rpaA_
not modelled 12.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:probable manganese-dependent inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from staphylococcus2 aureus in complex with mn2+
68c3a9lB_
not modelled 12.1 33
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
69d1uw4a_
not modelled 11.4 27
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Smg-4/UPF3
70d1i74a_
not modelled 11.2 29
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
71d1ltqa1
not modelled 11.2 20
Fold:HAD-like
Superfamily:HAD-like
Family:phosphatase domain of polynucleotide kinase
72c6bs5B_
not modelled 10.7 25
PDB header:unknown function
Chain: B: PDB Molecule:anion transporter;
PDBTitle: crystal structure of amp-pnp-bound bacterial get3-like a and b in2 mycobacterium tuberculosis
73c3j6vQ_
not modelled 10.4 25
PDB header:ribosome
Chain: Q: PDB Molecule:28s ribosomal protein s17, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
74c4yooA_
not modelled 10.4 20
PDB header:transcription
Chain: A: PDB Molecule:retinoblastoma-like protein 1,retinoblastoma-like protein
PDBTitle: p107 pocket domain in complex with lin52 p29a peptide
75d1o57a1
not modelled 10.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of Bacillus PurR
76c5dniB_
not modelled 10.3 17
PDB header:lyase
Chain: B: PDB Molecule:putative l(+)-tartrate dehydratase subunit beta;
PDBTitle: crystal structure of methanocaldococcus jannaschii fumarate hydratase2 beta subunit
77c6hwhX_
not modelled 10.2 21
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
78d2a1xa1
not modelled 10.0 16
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:PhyH-like
79d1zj8a1
not modelled 8.6 16
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
80c4j0nA_
not modelled 8.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:isatin hydrolase b;
PDBTitle: crystal structure of a manganese dependent isatin hydrolase
81c5ykaA_
not modelled 8.2 27
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein kdoo;
PDBTitle: crystal structure of the kdo hydroxylase kdoo, a non-heme fe(ii)2 alphaketoglutarate dependent dioxygenase in complex with cobalt(ii)
82c4m1bA_
not modelled 8.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: structural determination of ba0150, a polysaccharide deacetylase from2 bacillus anthracis
83d2g40a1
not modelled 8.0 23
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:YkgG-like
84c2g40A_
not modelled 8.0 23
PDB header:unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution
85d2hawa1
not modelled 8.0 21
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
86c1j6uA_
not modelled 7.8 14
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase murc (tm0231)2 from thermotoga maritima at 2.3 a resolution
87d1e0ta1
not modelled 7.7 11
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
88d1g03a_
not modelled 7.6 33
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
89d2g50a1
not modelled 7.6 11
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
90d2uubp1
not modelled 7.6 12
Fold:Ribosomal protein S16
Superfamily:Ribosomal protein S16
Family:Ribosomal protein S16
91d1d8ja_
not modelled 7.4 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:The central core domain of TFIIE beta
92d1wu2a2
not modelled 7.3 16
Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
93c3c7xA_
not modelled 7.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-14;
PDBTitle: hemopexin-like domain of matrix metalloproteinase 14
94c5nmpF_
not modelled 7.1 26
PDB header:hydrolase
Chain: F: PDB Molecule:isatin hydrolase;
PDBTitle: isatin hydrolase a (iha) from ralstonia solanacearum
95d1a3xa1
not modelled 7.1 5
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
96c5lz6B_
not modelled 7.1 29
PDB header:antiviral protein
Chain: B: PDB Molecule:3a;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of aichivirus b
97c4akrC_
not modelled 7.1 26
PDB header:actin-binding protein
Chain: C: PDB Molecule:f-actin-capping protein subunit alpha;
PDBTitle: crystal structure of the cytoplasmic actin capping protein2 cap32_34 from dictyostelium discoideum
98c5onkA_
not modelled 7.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
99d1zgha2
not modelled 6.9 21
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase

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