Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1132_(-)_1257330_1259060
DateWed Jul 31 22:05:21 BST 2019
Unique Job IDb8e57904c04f01ee
SequenceMGFLQPRLPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.387 Y:40.376 Z:60.557
Model (left) based on template d2r6gf1
Top template information
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
Confidence and coverage
Confidence: 56.9% Coverage: 11%
66 residues ( 11% of your sequence) have been modelled with 56.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gf1



56.9 15
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
2c3hi2C_



38.8 33
PDB header:dna binding protein/toxin
Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit);
PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022)
3d1fo1a2



37.6 35
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
4c4gvsA_



34.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: x-ray structure of the archaeoglobus fulgidus methenyl-2 tetrahydromethanopterin cyclohydrolase in complex with n5-formyl-3 tetrahydromethanopterin
5d1qlma_



33.8 21
Fold:Methenyltetrahydromethanopterin cyclohydrolase
Superfamily:Methenyltetrahydromethanopterin cyclohydrolase
Family:Methenyltetrahydromethanopterin cyclohydrolase
6c2hjjA_



32.8 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ykff;
PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397.
7d2hjja1



32.8 38
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YkfF-like
8d1b4ra_



26.8 83
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
9c4fioA_



25.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: crystal structure of methenyltetrahydromethanopterin cyclohydrolase2 from methanobrevibacter ruminantium
10d1vkwa_



24.9 33
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:Putative nitroreductase TM1586
11c3iacA_



24.8 23
PDB header:isomerase
Chain: A: PDB Molecule:glucuronate isomerase;
PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium.
12c2l6pA_



21.7 22
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
13d1j2jb_



20.1 28
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
14d1wgoa_



19.7 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
15c5jpqi_



19.2 36
PDB header:ribosome
Chain: I: PDB Molecule:u3 small nucleolar rna-associated protein 21;
PDBTitle: cryo-em structure of the 90s pre-ribosome
16c6rdf7_



18.3 31
PDB header:proton transport
Chain: 7: PDB Molecule:mitochondrial atp synthase associated protein asa7;
PDBTitle: cryoem structure of polytomella f-atp synthase, primary rotary state2 3, monomer-masked refinement
17c2zpaB_



18.0 36
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein ypfi;
PDBTitle: crystal structure of trna(met) cytidine acetyltransferase
18c1x27F_



17.7 23
PDB header:signaling protein
Chain: F: PDB Molecule:proto-oncogene tyrosine-protein kinase lck;
PDBTitle: crystal structure of lck sh2-sh3 with sh2 binding site of2 p130cas
19c2l6nA_



17.6 35
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
20c4yubB_



17.3 15
PDB header:ligase
Chain: B: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of human nicotinic acid phosphoribosyltransferase
21c4umoB_



not modelled 17.1 21
PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1;
PDBTitle: crystal structure of the kv7.1 proximal c-terminal domain in complex2 with calmodulin
22c3iynR_



not modelled 16.5 56
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
23c5n4cF_



not modelled 16.0 47
PDB header:hydrolase
Chain: F: PDB Molecule:alpha-amanitin proprotein;
PDBTitle: prolyl oligopeptidase b from galerina marginata bound to 35mer2 hydrolysis and macrocyclization substrate - s577a mutant
24d1kpta_



not modelled 15.4 17
Fold:Yeast killer toxins
Superfamily:Yeast killer toxins
Family:Virally encoded KP4 toxin
25d1c0pa1



not modelled 15.3 11
Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
26c3iynQ_



not modelled 14.9 56
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
27c4xedA_



not modelled 14.7 50
PDB header:protein binding
Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a;
PDBTitle: pkd domain of m14-like peptidase from thermoplasmatales archaeon scgc2 ab-540-f20
28c4ep5A_



not modelled 14.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endodeoxyribonuclease ruvc;
PDBTitle: thermus thermophilus ruvc structure
29c3chxE_



not modelled 14.7 14
PDB header:membrane protein
Chain: E: PDB Molecule:pmob;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
30c1nafA_



not modelled 13.8 28
PDB header:signaling protein, membrane protein
Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1;
PDBTitle: crystal structure of the human gga1 gat domain
31c4l9dB_



not modelled 13.4 67
PDB header:cell adhesion
Chain: B: PDB Molecule:protease;
PDBTitle: crystal structure of the pkd1 domain from vibrio cholerae2 metalloprotease prtv
32d1l0qa1



not modelled 13.3 83
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
33d1oxza_



not modelled 12.9 28
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
34c1oxzA_



not modelled 12.9 28
PDB header:membrane protein
Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1;
PDBTitle: crystal structure of the human gga1 gat domain
35c5ubdB_



not modelled 12.8 67
PDB header:dna binding protein
Chain: B: PDB Molecule:rctb replication initiator protein;
PDBTitle: crystal structure of the n-terminal domain (domain 1) of rctb, rctb-1-2 124-l48m
36d1c3ha_



not modelled 11.7 10
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
37c1avoA_



not modelled 11.6 54
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
38c5hbaA_



not modelled 11.5 14
PDB header:immune system
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: globular domain of zebrafish complement 1qa protein
39c5tvfF_



not modelled 11.4 29
PDB header:lyase
Chain: F: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme-like,
PDBTitle: crystal structure of trypanosoma brucei adometdc/prozyme heterodimer2 in complex with inhibitor cgp 40215
40c4z9nB_



not modelled 11.3 12
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: abc transporter / periplasmic binding protein from brucella ovis with2 glutathione bound
41d1ttja_



not modelled 11.3 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
42c3luuA_



not modelled 11.1 30
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
43d1oz9a_



not modelled 10.9 24
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
44c6aemB_



not modelled 10.6 67
PDB header:unknown function
Chain: B: PDB Molecule:pkd domain;
PDBTitle: crystal structure of the pkd1 domain of vibrio anguillarum epp
45c3nhnA_



not modelled 10.6 26
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase hck;
PDBTitle: crystal structure of the src-family kinase hck sh3-sh2-linker2 regulatory region
46c3oakD_



not modelled 10.6 100
PDB header:transcription
Chain: D: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
47d1r2ra_



not modelled 10.6 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
48d1pk6c_



not modelled 10.4 10
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
49c4ohqB_



not modelled 10.3 11
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase, chloroplastic;
PDBTitle: crystal structure of chloroplast triose phosphate isomerase from2 arabidopsis thaliana
50c3oakC_



not modelled 10.2 100
PDB header:transcription
Chain: C: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
51c3gzrA_



not modelled 10.2 25
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
52d1rgoa2



not modelled 10.0 33
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
53c4mknA_



not modelled 9.8 11
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
54c5xywD_



not modelled 9.8 57
PDB header:protein binding
Chain: D: PDB Molecule:gd21652;
PDBTitle: crystal structure of drosophila simulans rhino chromoshadow domain in2 complex with n-terminal domain
55c4whnB_



not modelled 9.7 21
PDB header:transferase
Chain: B: PDB Molecule:apxc;
PDBTitle: structure of toxin-activating acyltransferase (taat)
56c2q3vB_



not modelled 9.5 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein at2g34160;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160
57c3m9yB_



not modelled 9.5 8
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution
58c5kc5A_



not modelled 9.5 24
PDB header:signaling protein
Chain: A: PDB Molecule:cerebellin-1;
PDBTitle: crystal structure of the cbln1 c1q domain trimer
59d1mo0a_



not modelled 9.2 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
60d1b9ba_



not modelled 9.1 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
61c4y9aB_



not modelled 9.1 14
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from streptomyces2 coelicolor
62c4oumA_



not modelled 9.0 24
PDB header:signaling protein
Chain: A: PDB Molecule:caprin-2;
PDBTitle: crystal structure of human caprin-2 c1q domain
63d1suxa_



not modelled 9.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
64c2wltA_



not modelled 9.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase at 1.4 a2 resolution
65c2mc3A_



not modelled 8.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:mus81 endonuclease homolog (yeast), isoform cra_b;
PDBTitle: nmr solution structure of the winged-helix domain from mus812 structure-specific endonuclease
66c4d7yA_



not modelled 8.4 10
PDB header:signaling protein
Chain: A: PDB Molecule:c1q-related factor;
PDBTitle: crystal structure of mouse c1ql1 globular domain
67d1sw3a_



not modelled 8.3 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
68c2ka3C_



not modelled 8.3 19
PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
69c4i19A_



not modelled 8.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: the crystal structure of an epoxide hydrolase from streptomyces2 carzinostaticus subsp. neocarzinostaticus.
70c4obtA_



not modelled 8.0 14
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase, cytosolic;
PDBTitle: crystal structure of arabidopsis thaliana cytosolic triose phosphate2 isomerase
71d1b5ea_



not modelled 7.9 12
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
72d2p02a3



not modelled 7.9 20
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
73d1n55a_



not modelled 7.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
74d1qm4a3



not modelled 7.8 16
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
75c5zg5B_



not modelled 7.8 11
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase sadsubaaa mutant from2 opisthorchis viverrini
76c3j3bG_



not modelled 7.7 44
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
77c2m3dA_



not modelled 7.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:nucleolar rna helicase 2;
PDBTitle: nmr structure of the guct domain from human dead box polypeptide 21
78c3qstA_



not modelled 7.6 17
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase, putative;
PDBTitle: crystal structure of trichomonas vaginalis triosephosphate isomerase2 tvag_096350 gene (val-45 variant)
79d1m6ja_



not modelled 7.6 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
80c4f3jA_



not modelled 7.6 9
PDB header:signaling protein
Chain: A: PDB Molecule:complement c1q tumor necrosis factor-related protein 5;
PDBTitle: crystal structure of trimeric gc1q domain of human c1qtnf5 associated2 with late-onset retinal macular degeneration
81d1fngb2



not modelled 7.5 33
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
82d1kfia4



not modelled 7.5 25
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
83d1pk6a_



not modelled 7.5 14
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
84c4ediC_



not modelled 7.5 16
PDB header:transport protein
Chain: C: PDB Molecule:ethanolamine utilization protein;
PDBTitle: disulfide bonded eutl from clostridium perfringens
85c4esjA_



not modelled 7.5 38
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna
86d2btma_



not modelled 7.4 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
87c4a1eF_



not modelled 7.4 39
PDB header:ribosome
Chain: F: PDB Molecule:rpl7a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
88c2kzwA_



not modelled 7.4 83
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a
89c2q74B_



not modelled 7.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: mycobacterium tuberculosis suhb
90d1u5la_



not modelled 7.4 36
Fold:Prion-like
Superfamily:Prion-like
Family:Prion-like
91c3x0uB_



not modelled 7.4 20
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
92c2yt6A_



not modelled 7.4 19
PDB header:cell cycle
Chain: A: PDB Molecule:adult male urinary bladder cdna, riken full-
PDBTitle: solution structure of the sh3_1 domain of yamaguchi sarcoma2 viral (v-yes) oncogene homolog 1
93d1mxaa3



not modelled 7.3 25
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
94d1kv5a_



not modelled 7.3 14
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
95d1q1va_



not modelled 7.2 24
Fold:Another 3-helical bundle
Superfamily:DEK C-terminal domain
Family:DEK C-terminal domain
96c1l0qC_



not modelled 7.2 83
PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
97d1pk6b_



not modelled 7.2 14
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
98c2x3mA_



not modelled 7.1 19
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein orf239;
PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus
99c1qeyD_



not modelled 7.1 19
PDB header:gene regulation
Chain: D: PDB Molecule:protein (regulatory protein mnt);
PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below