Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1134_(-)_1261927_1262163
DateWed Jul 31 22:05:21 BST 2019
Unique Job ID82f88a5c136add26
SequenceMAAYQKFGQE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.931 Y:46.348 Z:31.235
Model (left) based on template d1s7ia_
Top template information
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
Confidence and coverage
Confidence: 98.5% Coverage: 56%
44 residues ( 56% of your sequence) have been modelled with 98.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1s7ia_



98.5 27
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
2c4pfeB_



31.1 33
PDB header:fluorescent protein
Chain: B: PDB Molecule:green fluorescent protein;
PDBTitle: crystal structure of vsfgfp-0
3d1npha2



28.0 21
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
4c6ce1A_



23.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-3;
PDBTitle: crystal structure of peptidyl arginine deiminase type iii (padi3)
5d1d0na5



20.5 23
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
6c3f6hA_



16.9 28
PDB header:transferase
Chain: A: PDB Molecule:alpha-isopropylmalate synthase;
PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii
7d1k28d1



16.5 43
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
8c4n2gA_



16.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
9c2lclA_



15.2 33
PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator rfah;
PDBTitle: solution structure of rfah carboxyterminal domain
10d1nppa2



14.8 33
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
11d2fh1a2



13.9 23
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
12d1nz9a_



12.9 33
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
13c5hp5A_



12.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-1;
PDBTitle: srtucture of human peptidylarginine deiminase type i (pad1)
14c1pdjF_



11.5 43
PDB header:structural protein
Chain: F: PDB Molecule:baseplate structural protein gp27;
PDBTitle: fitting of gp27 into cryoem reconstruction of bacteriophage t42 baseplate
15d1kr4a_



11.3 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
16d1vhfa_



10.8 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
17c4n2kA_



10.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (q350a, 0 mm ca2+)
18d1y60a_



10.4 48
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Formaldehyde-activating enzyme, FAE
19d1ukua_



10.3 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
20c6e2pC_



9.7 71
PDB header:signaling protein
Chain: C: PDB Molecule:leptin receptor;
PDBTitle: structure of human jak2 ferm/sh2 in complex with leptin receptor
21c2mi6A_



not modelled 9.6 42
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusg;
PDBTitle: solution structure of the carboxy terminal domain of nusg from2 mycobacterium tuberculosis
22c6gdxA_



not modelled 9.4 27
PDB header:metal binding protein
Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein;
PDBTitle: structure of cuta from synechococcus elongatus pcc7942 complexed with2 3 molecules of bis-tris
23c2jvvA_



not modelled 9.3 42
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of e. coli nusg carboxyterminal domain
24c2kvqG_



not modelled 9.3 42
PDB header:transcription
Chain: G: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of nuse:nusg-ctd complex
25d1p1la_



not modelled 8.9 36
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
26c5iiaH_



not modelled 8.5 22
PDB header:cell adhesion
Chain: H: PDB Molecule:vitelline envelope sperm lysin receptor;
PDBTitle: crystal structure of red abalone egg verl repeat 3 in complex with2 sperm lysin at 1.7 a resolution (crystal form i)
27c3n70F_



not modelled 8.1 54
PDB header:transport protein
Chain: F: PDB Molecule:transport activator;
PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a
28c1m1gB_



not modelled 8.1 33
PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
29d1tg7a2



not modelled 8.0 32
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Beta-galactosidase LacA, domains 4 and 5
30d2evra1



not modelled 7.3 63
Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:Spr N-terminal domain-like
31d1svya_



not modelled 7.2 20
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
32c2xk0A_



not modelled 6.9 31
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
33d1sr9a3



not modelled 6.8 32
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
34c5c2uA_



not modelled 6.7 50
PDB header:transport protein
Chain: A: PDB Molecule:nup54;
PDBTitle: ferredoxin-like domain of nucleoporin nup54 bound to a nanobody
35d1vtxa_



not modelled 6.3 45
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
36c2zomC_



not modelled 6.2 55
PDB header:unknown function
Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed;
PDBTitle: crystal structure of cuta1 from oryza sativa
37d1d1la_



not modelled 6.1 32
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
38c4e98C_



not modelled 6.1 18
PDB header:signaling protein
Chain: C: PDB Molecule:cuta1 divalent ion tolerance protein;
PDBTitle: crystal structure of possible cuta1 divalent ion tolerance protein2 from cryptosporidium parvum iowa ii
39c2ql8A_



not modelled 6.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative redox protein;
PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution
40c1xk8A_



not modelled 6.0 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:divalent cation tolerant protein cuta;
PDBTitle: divalent cation tolerant protein cuta from homo sapiens o60888
41d2zfha1



not modelled 6.0 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
42c2zfhA_



not modelled 5.9 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution
43c4za1A_



not modelled 5.9 67
PDB header:transferase
Chain: A: PDB Molecule:nosa;
PDBTitle: crystal structure of nosa involved in nosiheptide biosynthesis
44d1naqa_



not modelled 5.2 36
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
45d4croa_



not modelled 5.2 34
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors

Binding site prediction 

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